Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o08
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0491 - 18707721-18708179 33 0.21
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 32 0.48
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 31 1.1
12_02_0548 - 20315842-20316017,20316382-20316574 31 1.5
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 31 1.5
11_06_0291 + 22008412-22012284 30 2.5
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 29 3.4
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 3.4
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189 29 3.4
02_02_0240 + 8196140-8198248,8198381-8198650 29 3.4
10_08_0442 + 17957358-17958075,17958156-17958242,17958547-179586... 29 4.4
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 29 4.4
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 29 4.4
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 29 4.4
11_06_0745 + 26857968-26859955,26860697-26860712 29 5.9
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 29 5.9
06_03_1400 + 29901835-29902136,29902913-29902934 29 5.9
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 29 5.9
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 29 5.9
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121 28 7.8
08_01_0621 - 5426210-5427787 28 7.8
07_01_0811 - 6377328-6377628,6377708-6377878,6377961-6378145,637... 28 7.8
>07_03_0491 - 18707721-18708179
Length = 152
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 142 LLEKNTFERSSR--SSKRPGTLSSRSGRPRPLQKXGYR 35
LL N +R SR S RPGT ++RS RPRP G R
Sbjct: 52 LLRANQAQRRSRTPSLSRPGTAAARSSRPRPGSAVGGR 89
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 32.3 bits (70), Expect = 0.48
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +2
Query: 401 LPRDINSRVYCMTCICKRVDATYDVPV*SRLFHDCPETVAQLHFLYRKWKRDPTPCDERL 580
+P N+ C CI RVD VP + + H CP + LH R W R E +
Sbjct: 444 VPMAPNAANTCALCIRSRVDIAAGVPRHADVVH-CPSCSSYLH-PPRLWLRAAPESPELM 501
Query: 581 SMVCRR 598
S++ RR
Sbjct: 502 SLLLRR 507
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 701 RPNIPFIVSKSTAPSHN-IGVNIQQVLNGLKVQQPLSGIPSTIAHHMGLG 555
RP + FI +ST P+H+ I +QQVL+ V P PST GLG
Sbjct: 255 RPGVSFIQRQSTFPNHSAIAKTVQQVLH-QPVNHPNWIPPSTEYMRSGLG 303
>12_02_0548 - 20315842-20316017,20316382-20316574
Length = 122
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -2
Query: 578 IAHHMGLGHVSTYGTRSATAQPSLDNREINVIKLGHRMLRLPSYKYMSYNRLLNLYR 408
+A+ GLGH S YG + + +++ +I G +LRL + S+ ++LYR
Sbjct: 50 VAYMHGLGH-SLYGWKGISLLGEVNHASTRLITRGDVVLRLRGSRACSFRSQIDLYR 105
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/74 (27%), Positives = 41/74 (55%)
Frame = -2
Query: 239 LYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASA 60
L ++YE++ K K L++ KE++ KE+ E I+++ ++ +S S + L +A
Sbjct: 193 LTKKYENLTK--KRNEDLAKLKKEKEDMEKEIRGLRERIKELEEQVISSSSSGKSLTNNA 250
Query: 59 STTEXRVQALNIQI 18
+ E ++ +N QI
Sbjct: 251 A--ENIMEGINKQI 262
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = -2
Query: 323 DRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKEL 144
+ ++ D + G G +E + + +E H EK + + E+RKEE +KE
Sbjct: 426 EENEKDKGEADGEGEQEEEMKDKEKGGEERKEEPHHEKQEHKKEKEVKEEERKEEQNKEK 485
Query: 143 ASREEHIRKVV-----KEFKASGDSE 81
RE K V KE K GD +
Sbjct: 486 EEREGTEEKQVGGGEKKEEKEDGDDD 511
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 29.5 bits (63), Expect = 3.4
Identities = 31/119 (26%), Positives = 48/119 (40%)
Frame = -2
Query: 398 GIVPRFLKAINRPHYFYTSMYNLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEH 219
G+VP F K +N FY S Y+ A D D T+K + E++ Y + + EH
Sbjct: 321 GLVPGFGKKLNAILDFYLSEYDTEAMYFDEDVRTAKRQ--QLESEILKHTYDAFKKMLEH 378
Query: 218 IEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXR 42
+ + ++ LEQ AS ++ + EF A A TT+ R
Sbjct: 379 LHHVVL-NKFKSDLEQSLRSGEGFAASARYCVQSSMAEFDAGLRDALVKHAEWDTTKVR 436
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = -2
Query: 272 EAKQ----SLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKV 114
EAKQ + +++S+ R+YE+I C++E LE K+ L ++ +++ ++++
Sbjct: 721 EAKQFVCGDITQFSSVIRDYENISNCLRE--KLSKLEMEKKILDEQSLDQKDELQRL 775
>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
Length = 470
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/86 (25%), Positives = 32/86 (37%)
Frame = -2
Query: 347 TSMYNLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQR 168
T+M +T +DD + + SL L R HI G P
Sbjct: 65 TAMEIVTCSQDDVSRCPQEKTVNLHDLHNSLIASKELVRVLAHIWG---PGELNPSTTSL 121
Query: 167 KEELSKELASREEHIRKVVKEFKASG 90
L E+ H+RK++KE K+ G
Sbjct: 122 ISALRSEIDLARSHVRKLIKEQKSEG 147
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 281 GSQEAKQSLAEYAS-LYREYEHIE-KCIKEGPYQPHLEQRKEELSKELASREEHIRKVVK 108
G +EA LAE A + E + E + ++EG LE+ + + +LA EE ++VK
Sbjct: 339 GEEEAAMELAEPAKDVEMEMDEEEIQLVEEGMRAARLEENEGGVQVKLAGDEEPPMRIVK 398
Query: 107 EFK 99
+K
Sbjct: 399 NYK 401
>10_08_0442 +
17957358-17958075,17958156-17958242,17958547-17958647,
17958766-17958834,17958989-17959156
Length = 380
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -2
Query: 320 RDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELA 141
R+D + R +Q+ ++ EY E++ K+G + KE KE A
Sbjct: 117 RNDDKSLRREHRSKNQDKQEPSREYPRYDGEHDKYSDGKKQGHTSRRYPEEKESKYKETA 176
Query: 140 SREEHIRK-VVKEFKASGDSEQP 75
+EE ++K KE + +P
Sbjct: 177 KQEEALKKRTGKEIEKMSSVAEP 199
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = -2
Query: 179 LEQRKEELSKELASREEHI---RKVVKEFKASGDSEQPLRASAST 54
LEQ+ EELSK+L S E+ + ++KE +A+ Q RA+A T
Sbjct: 252 LEQQVEELSKKLCSTEDELEVTNAMLKETQAAMLEAQSDRATAIT 296
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 641 NIQQVLNGLKVQQPLSGIPSTIAHHMGLGHVSTYGTRSATAQPSL 507
+I V GL++ P +PS+ H GL H YG + P+L
Sbjct: 231 SIPSVGAGLQMGSPSMSLPSSSYHMAGLSHGLPYGGSVSFGSPNL 275
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 164 EELSKELASREEHIRKVVKEFKASGDSE-QPLRASASTTEXRVQALNIQIKRRR 6
E + KE+A+ E I++ VKE A+ E + +R T E +QA RR+
Sbjct: 418 ENIEKEIATTEGRIKQSVKELDAAKALEAEAMRKLRDTVESTMQARASSAARRQ 471
>11_06_0745 + 26857968-26859955,26860697-26860712
Length = 667
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 632 QVLNGLKVQQPLSGIPSTIAHHMGLGHVS 546
Q L LKV + G+PS I H GL H+S
Sbjct: 298 QYLETLKVDGNIDGVPSDIIHLPGLLHLS 326
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 588 YAGEGLLHFQTIQNLLYVYADVMRRRGALAHNERYI 695
Y + L HF T ++++ Y D++R R AL + ++
Sbjct: 851 YIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFL 886
>06_03_1400 + 29901835-29902136,29902913-29902934
Length = 107
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 147 AGF*RRTHSKGRQGVQSVRGL*AAAPGVRVHYRRXGTG 34
AG R GR GV++ L AAP R HY G G
Sbjct: 15 AGARRGGGGGGRCGVRASAALAVAAPAARTHYEVLGVG 52
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 662 PSHNIGVNIQQVLNGLKVQQPLSGIPSTIAHHMGLGHVS 546
P+H G+ Q L LK+ + +PS I H GL H+S
Sbjct: 621 PTHMQGL---QYLEALKIDGKIDAVPSDIVHLPGLLHLS 656
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 170 RKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRRR 6
R++ + KE EE ++K +KE G + L+ + A+N Q K R+
Sbjct: 662 RRQLVEKEKIEAEELLQKQIKEIAKRGGKKPVLQGEVTKEAVMELAMNEQFKERQ 716
>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
Length = 499
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 374 AINRPHYFYTSMYNLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKE 198
A N P F A + DGA+++ R E+++ L YA L ++H +K+
Sbjct: 60 AFNLPAVFTIGPKITPAPAPEVDGASNQRRVLMPESEEKLLLYAKLIAPHDHASNHVKQ 118
>08_01_0621 - 5426210-5427787
Length = 525
Score = 28.3 bits (60), Expect = 7.8
Identities = 27/106 (25%), Positives = 42/106 (39%)
Frame = -2
Query: 395 IVPRFLKAINRPHYFYTSMYNLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHI 216
++ RF +NR F M + +D D A S G EA+ +L YR H
Sbjct: 1 MMSRFSGRLNR---FVCGMAAPPPEEEDDDAAASAGG----EAEDALNTPFLRYRRARHR 53
Query: 215 EKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQ 78
PY P +E+ KE E R+++ E + + E+
Sbjct: 54 PSPPLAAPYWPRGFADEEKAEKEAVVFEAAFRRLLAEKEEKAEEEE 99
>07_01_0811 -
6377328-6377628,6377708-6377878,6377961-6378145,
6378255-6378797,6378879-6379304,6379383-6380116,
6380205-6380334
Length = 829
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = -2
Query: 296 SKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLE-QRKEELSKELASR-EEHI 123
++G G K L +Y+S YR+++ + K ++ + L+ + +EL + +R EE +
Sbjct: 326 TRGIGSDVPWKHGLPQYSSQYRKWK-VSKEERDARLKAELKVEVIQELEASMNARVEERV 384
Query: 122 RKVVKEFKAS---GDSEQPLRASASTTEXRVQALNI 24
KV+ + S S R+S ++TE L I
Sbjct: 385 NKVLADMNRSVQHDASPSQHRSSCASTEVPAPGLPI 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,905,552
Number of Sequences: 37544
Number of extensions: 507781
Number of successful extensions: 1560
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -