Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o08
(819 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0) 40 0.002
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_4406| Best HMM Match : NGF (HMM E-Value=6.8) 35 0.069
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037) 32 0.49
SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08) 31 0.85
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 31 1.1
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) 30 2.0
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 3.4
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 29 4.5
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1) 29 4.5
SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_2208| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 29 6.0
SB_53660| Best HMM Match : COLFI (HMM E-Value=1.5) 29 6.0
SB_44864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_43891| Best HMM Match : zf-C2H2 (HMM E-Value=3e-30) 29 6.0
SB_41945| Best HMM Match : Disintegrin (HMM E-Value=2.4) 29 6.0
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 29 6.0
SB_39014| Best HMM Match : TPR_2 (HMM E-Value=0.19) 28 7.9
>SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)
Length = 734
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -2
Query: 692 IPFIVSKSTAPSHNIGVNIQQVLNGLKVQQP 600
IPF+V KS + SH++G NIQQ L+ LK P
Sbjct: 527 IPFVVGKSASKSHSVGANIQQALHLLKGHNP 557
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 35.1 bits (77), Expect = 0.069
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Frame = -2
Query: 386 RFLKAINRPHYFYTSMYNLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKC 207
+ +A N F+T NL DD G R QEA+ + L +E + +
Sbjct: 4386 KLTEAANLSDRFFTEQDNLLNWFDDMKGKLEDARAEDQEAEDEQKKLKDLQQEISNKQPS 4445
Query: 206 IKEGPYQPHLEQRKEELSKELASREEHIRKVVKE-FKASGDSEQPLRASASTTEXRVQAL 30
IK + ++ K+ L+++ + + V E +KA + L S + + RV+A
Sbjct: 4446 IKF--HMQTVDALKKLLAEDEKPKVASASEEVHEKWKALSADVENLAKSMFSAQERVEAF 4503
Query: 29 NIQIKRRR 6
N++++ +
Sbjct: 4504 NLRLEEMK 4511
>SB_4406| Best HMM Match : NGF (HMM E-Value=6.8)
Length = 405
Score = 35.1 bits (77), Expect = 0.069
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = -2
Query: 458 LPSYKYMSYNRLLNLYREGDGIVPRFLKAINRPHYFYTSMYNLTADRDDFDGATSKGRGG 279
LP+Y+ + R+L + I P F + P TS+Y ++ + TS G G
Sbjct: 307 LPNYQSYASQRMLQMENNNVSIAPAFRSKVASPRKEMTSIYRVSTGVVFLEECTSVGIGP 366
Query: 278 SQEAKQSLAEYA 243
+ +AK ++ +A
Sbjct: 367 NTQAKTNVTLFA 378
>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
Length = 1127
Score = 32.3 bits (70), Expect = 0.49
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Frame = -2
Query: 272 EAKQSLAEYASLYREYEHIEKCIKEGPYQP--HLEQRKEELSKELASREEHIRKVVKEFK 99
E L++Y +YE +EK K + H++ KEE+SK A + E K +KE
Sbjct: 412 ELNSKLSKYEG---DYEELEKQYKTHFMESGEHIQSLKEEISKVTAQKLEIEGKYLKELN 468
Query: 98 ASGDS----EQPLRASASTTEXRVQA 33
S +S E L++ T R++A
Sbjct: 469 LSKESASERENKLKSELEETSKRLKA 494
>SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)
Length = 800
Score = 31.5 bits (68), Expect = 0.85
Identities = 26/93 (27%), Positives = 39/93 (41%)
Frame = -2
Query: 296 SKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRK 117
SK R Q E L E E+ K P L Q +EE+++ + EH+
Sbjct: 288 SKARDYENCISQLRKELKELKERLEKAEE--KSSKPSPLLVQLQEEMAE---MKREHMEA 342
Query: 116 VVKEFKASGDSEQPLRASASTTEXRVQALNIQI 18
V +E K + D+E L+ E RV L ++
Sbjct: 343 VSREQKRANDAEDKLKLITCVEEDRVADLETKL 375
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -2
Query: 173 QRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQI 18
QR EL KEL++ + + K+ K+ +A ++ L + E ++ ALN ++
Sbjct: 63 QRSPELEKELSALRQKVHKLEKDNEAQRNNIARLESDMQDKEDQIDALNREL 114
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = -2
Query: 182 HLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRRRS 3
+L+ R EEL + L + E K +E + D+EQ +A T ++ L+ +++ RS
Sbjct: 670 NLQGRVEELEEMLEAEREKQHKKNEEISSDEDAEQARQALEETMHTTIEELHEEVETLRS 729
>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
Length = 969
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 275 QEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRK---EELSKELASREEHIRKVVKE 105
+EA + + + E +++ + +G Q HLEQ K E++ L +E +R +E
Sbjct: 723 EEAMNKIKDATGVSDIKEVVQRFLSQGDTQKHLEQLKNNNEKMLVRLKEDKEKLRLEYEE 782
Query: 104 FKASGDS 84
K SG++
Sbjct: 783 MKYSGEA 789
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 182 HLEQRKEELSKELASREEHIRKVVKEFKASGD 87
H+E R + L++ + HIR VVK KA+GD
Sbjct: 50 HIEWRIDPLNQYFDPQRAHIRLVVKVTKANGD 81
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 287 RGGSQEAKQSLAEYASLYREYEHIE-KCIKEGPYQPHLEQRKEELSKELASREEHIRKVV 111
RG + + L+R+ H K + YQ + Q EEL K +A + I V
Sbjct: 453 RGERPLVFEDYGRHVKLHRKMGHRALKVYSQKKYQQVIIQEAEELCKRIADSSDRIFDVK 512
Query: 110 KEF 102
KEF
Sbjct: 513 KEF 515
>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
Length = 1936
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = -2
Query: 275 QEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKA 96
+E K+ L E + EY+ + K + HLEQ+K+ L +E+ R+E RK KE +A
Sbjct: 1176 EEEKRRLEEMSE--EEYDALTDDQKAEVDRKHLEQKKQRLKREM-ERQEKERK-EKEMQA 1231
>SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1096
Score = 29.1 bits (62), Expect = 4.5
Identities = 25/97 (25%), Positives = 42/97 (43%)
Frame = -2
Query: 293 KGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKV 114
+GRGG+ E K+S A R+ E K +E + E EE+ E + +E R
Sbjct: 396 RGRGGNPEMKKSRKSAADFARDRELARKKEQE-KHGSDFEDADEEVIVEEENEKESER-- 452
Query: 113 VKEFKASGDSEQPLRASASTTEXRVQALNIQIKRRRS 3
+KE + + EQ + T + +R+R+
Sbjct: 453 IKEENENVEKEQRTASKEKTASVGSKPKRYSSQRQRA 489
>SB_2208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 611 LSDHSKPAVCLRRCYAKARCSCS 679
L DH +P+VC+ C +RC+ S
Sbjct: 67 LIDHQRPSVCMVTCQFNSRCAVS 89
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -2
Query: 203 KEGPYQPHLEQRKEELSKELASREEHIRKV----VKEFK-ASGDSEQPLRASASTTEXRV 39
K+ + L ++++E+ LAS+EEH++ + VKE + A + E A+ E +
Sbjct: 242 KDSELEKALAKKEKEMEALLASKEEHMKALLDEKVKEIEIAVDEKELQKEAALKEKEKEL 301
Query: 38 QALNIQIK 15
Q L Q++
Sbjct: 302 QQLKNQVE 309
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 233 REYEHIEKCIKEGPYQPHLEQR-KEELSKELASREEHIRKVVKE 105
RE H E KE Q E+R +EE ++ A +EE +RK+ +E
Sbjct: 164 RELAHQEMLRKEQEQQEEEERRIREEEERQKALKEERMRKLQEE 207
>SB_53660| Best HMM Match : COLFI (HMM E-Value=1.5)
Length = 471
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 619 PFKTCCMFTPMLCEGAVLLLTMNGILGRF 705
PF+T C F PM G L+ +NG+ F
Sbjct: 69 PFQTHCQFEPMANRGWTLVARINGLSNDF 97
>SB_44864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 558 GSRFHL-RYKKCNCATVSGQS*NKRDQTGTSYVASTLLQIHVI 433
G RF L R+ K + T SGQ ++ DQ G + S L+ H+I
Sbjct: 231 GKRFTLSRHLKLHLITHSGQKPHRCDQCGKRFTRSESLKRHLI 273
>SB_43891| Best HMM Match : zf-C2H2 (HMM E-Value=3e-30)
Length = 130
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 558 GSRFHL-RYKKCNCATVSGQS*NKRDQTGTSYVASTLLQIHVI 433
G RF L R+ K + T SGQ ++ DQ G + S L+ H+I
Sbjct: 39 GKRFTLSRHLKLHLITHSGQKPHRCDQCGKRFTRSESLKRHLI 81
>SB_41945| Best HMM Match : Disintegrin (HMM E-Value=2.4)
Length = 626
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -2
Query: 278 SQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRK 117
SQ + L + + Y EY+H +K K EQ ++E+ ++ + + +RK
Sbjct: 126 SQIRRSKLRKDYAKYNEYKHKDKERKRAERDRPKEQSQQEIDRKKKANRDRVRK 179
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 217 SRNASKKVRTSRTLSNGRRNYLKS----WLLEKNTFERSSRSSKRPGTLSSRS 71
SRN SK T+ + S Y S K+TFE +SK P T+ S+S
Sbjct: 229 SRNTSKPSSTTSSKSTFESGYNNSKPSSTTSSKSTFESGYNTSKPPSTMGSKS 281
>SB_39014| Best HMM Match : TPR_2 (HMM E-Value=0.19)
Length = 1036
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 278 SQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELS-KELASREEHIRK 117
SQ + L + + Y EY+H +K K EQ ++E+ K+ A+R +RK
Sbjct: 134 SQIRRSKLRKDYAKYNEYKHKDKERKRAERDRPKEQSQQEIDRKKKANRANRVRK 188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,290,259
Number of Sequences: 59808
Number of extensions: 583542
Number of successful extensions: 1836
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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