Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o08
         (819 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    29   0.23 
AJ973472-1|CAJ01519.1|  168|Anopheles gambiae hypothetical prote...    28   0.40 
AJ697732-1|CAG26925.1|  168|Anopheles gambiae putative chemosens...    28   0.40 
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    26   1.6  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    25   2.1  
CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein ...    23   8.6  
AY748839-1|AAV28187.1|  169|Anopheles gambiae cytochrome P450 pr...    23   8.6  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -2

Query: 617 LKVQQPLSGIPSTIAHHMGLGHVSTYGTRSATAQPSLDNREINVIK--LGHRMLRLPSYK 444
           L+ Q+   G        +G+    +YG     AQ  + +  INV +   G+     P + 
Sbjct: 632 LRFQKYFYGAIDGTPFSLGIALPDSYGVHELNAQQEIRHSHINVTEHFKGNNWKVHPDWV 691

Query: 443 YMSYNRLLNLYREGDG 396
           Y  YN L +    G+G
Sbjct: 692 YCEYNSLKDADGNGEG 707


>AJ973472-1|CAJ01519.1|  168|Anopheles gambiae hypothetical protein
           protein.
          Length = 168

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 206 IKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQ 36
           I E  Y P  E R++ +  +  +  EH+++  ++  +SGD +      A  TE   Q
Sbjct: 102 ILEQLYDPTGEYRRKYMQSDALA--EHVKQEDRDLSSSGDGDADTETEAHATEHNSQ 156


>AJ697732-1|CAG26925.1|  168|Anopheles gambiae putative chemosensory
           protein CSP3 protein.
          Length = 168

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 206 IKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQ 36
           I E  Y P  E R++ +  +  +  EH+++  ++  +SGD +      A  TE   Q
Sbjct: 102 ILEQLYDPTGEYRRKYMQSDALA--EHVKQEDRDLSSSGDGDADTETEAHATEHNSQ 156


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 809 PLPRAARSTEAIXTSXPTVASQMK 738
           P+PR+ R+   + TS P   SQM+
Sbjct: 197 PVPRSLRTNNVLNTSIPNHGSQMQ 220


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 145 WLLEKNTFERSSRSSKRPGTL 83
           W+L+K T  +S + + RPG L
Sbjct: 793 WVLDKETHRKSVQRAHRPGAL 813


>CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein
           protein.
          Length = 207

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 509 ETVAQLHFLYRKWKRDPTPCDE 574
           + V +L  LYRK    PTPC E
Sbjct: 115 DNVDRLQGLYRKSYIVPTPCKE 136


>AY748839-1|AAV28187.1|  169|Anopheles gambiae cytochrome P450
           protein.
          Length = 169

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 60  RGRPERLLRVPGRFELLDDLS 122
           R RPER L   GR  L  DLS
Sbjct: 112 RFRPERFLDEHGRLALAKDLS 132


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,512
Number of Sequences: 2352
Number of extensions: 19175
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86902827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)