Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o08
(819 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC113387-1|AAI13388.1| 248|Homo sapiens family with sequence si... 38 0.058
BC113385-1|AAI13386.1| 248|Homo sapiens family with sequence si... 38 0.058
AL009173-2|CAI42611.1| 248|Homo sapiens novel protein protein. 38 0.058
AK094978-1|BAC04467.1| 248|Homo sapiens protein ( Homo sapiens ... 38 0.058
BC029385-1|AAH29385.1| 450|Homo sapiens CEP57 protein protein. 34 0.71
BC001233-1|AAH01233.1| 500|Homo sapiens centrosomal protein 57k... 34 0.71
AY239292-1|AAP72184.1| 500|Homo sapiens proliferation-inducing ... 34 0.71
AY225092-1|AAO73938.1| 500|Homo sapiens translokin protein. 34 0.71
BC038294-1|AAH38294.1| 303|Homo sapiens C10orf46 protein protein. 31 3.8
AY743663-1|AAU89709.1| 306|Homo sapiens cullin protein. 31 3.8
AL139407-1|CAH73727.1| 246|Homo sapiens chromosome 10 open read... 31 3.8
AK130194-1|BAC85302.1| 158|Homo sapiens protein ( Homo sapiens ... 31 3.8
AK097728-1|BAC05153.1| 246|Homo sapiens protein ( Homo sapiens ... 31 3.8
AJ544771-1|CAD67614.1| 369|Homo sapiens hypothetical protein pr... 31 3.8
U63610-1|AAB05428.1| 4574|Homo sapiens plectin protein. 31 6.6
U53204-1|AAB05427.1| 4574|Homo sapiens plectin protein. 31 6.6
L40157-1|AAA79121.1| 1410|Homo sapiens endosome-associated prote... 31 6.6
L02785-1|AAA58443.1| 764|Homo sapiens DRA protein. 31 6.6
BC025671-1|AAH25671.1| 764|Homo sapiens solute carrier family 2... 31 6.6
AY480051-1|AAR95684.1| 4547|Homo sapiens plectin 11 protein. 31 6.6
AY480050-1|AAR95683.1| 4551|Homo sapiens plectin 10 protein. 31 6.6
AY480049-1|AAR95682.1| 4547|Homo sapiens plectin 8 protein. 31 6.6
AY480048-1|AAR95681.1| 4515|Homo sapiens plectin 7 protein. 31 6.6
AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein. 31 6.6
AY480046-1|AAR95679.1| 4525|Homo sapiens plectin 3 protein. 31 6.6
AY480045-1|AAR95678.1| 4533|Homo sapiens plectin 2 protein. 31 6.6
AY480044-1|AAR95677.1| 4574|Homo sapiens plectin 1 protein. 31 6.6
AC002467-3|AAB88772.1| 327|Homo sapiens unknown protein. 31 6.6
BC021134-1|AAH21134.1| 903|Homo sapiens centrobin, centrosomal ... 30 8.8
BC014055-1|AAH14055.3| 805|Homo sapiens CNTROB protein protein. 30 8.8
AY160227-1|AAO22136.1| 925|Homo sapiens centrobin beta protein. 30 8.8
AY160226-1|AAO22135.1| 903|Homo sapiens centrobin alpha protein. 30 8.8
AL162458-1|CAH74052.1| 579|Homo sapiens nuclear receptor coacti... 30 8.8
AL035662-2|CAI42972.1| 579|Homo sapiens nuclear receptor coacti... 30 8.8
AL035662-1|CAI42971.1| 104|Homo sapiens nuclear receptor coacti... 30 8.8
AK074847-1|BAC11241.1| 432|Homo sapiens protein ( Homo sapiens ... 30 8.8
AF470686-1|AAO33457.1| 579|Homo sapiens estrogen receptor coact... 30 8.8
AF331638-1|AAL56068.2| 903|Homo sapiens PP1221 protein. 30 8.8
AF230533-1|AAG36793.1| 621|Homo sapiens nuclear receptor coacti... 30 8.8
AB046857-1|BAB13463.1| 479|Homo sapiens KIAA1637 protein protein. 30 8.8
>BC113387-1|AAI13388.1| 248|Homo sapiens family with sequence
similarity 133, member A protein.
Length = 248
Score = 37.5 bits (83), Expect = 0.058
Identities = 22/100 (22%), Positives = 45/100 (45%)
Frame = -2
Query: 308 DGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREE 129
D ++S +E KQ R Y+ + E + +K++ SK+ +E+
Sbjct: 112 DSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEK 171
Query: 128 HIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+R + K+ K S ++PL + +S+ + + + KRR
Sbjct: 172 DVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRR 211
>BC113385-1|AAI13386.1| 248|Homo sapiens family with sequence
similarity 133, member A protein.
Length = 248
Score = 37.5 bits (83), Expect = 0.058
Identities = 22/100 (22%), Positives = 45/100 (45%)
Frame = -2
Query: 308 DGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREE 129
D ++S +E KQ R Y+ + E + +K++ SK+ +E+
Sbjct: 112 DSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEK 171
Query: 128 HIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+R + K+ K S ++PL + +S+ + + + KRR
Sbjct: 172 DVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRR 211
>AL009173-2|CAI42611.1| 248|Homo sapiens novel protein protein.
Length = 248
Score = 37.5 bits (83), Expect = 0.058
Identities = 22/100 (22%), Positives = 45/100 (45%)
Frame = -2
Query: 308 DGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREE 129
D ++S +E KQ R Y+ + E + +K++ SK+ +E+
Sbjct: 112 DSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEK 171
Query: 128 HIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+R + K+ K S ++PL + +S+ + + + KRR
Sbjct: 172 DVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRR 211
>AK094978-1|BAC04467.1| 248|Homo sapiens protein ( Homo sapiens
cDNA FLJ37659 fis, clone BRHIP2010610, weakly similar to
GAR2 PROTEIN. ).
Length = 248
Score = 37.5 bits (83), Expect = 0.058
Identities = 22/100 (22%), Positives = 45/100 (45%)
Frame = -2
Query: 308 DGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREE 129
D ++S +E KQ R Y+ + E + +K++ SK+ +E+
Sbjct: 112 DSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEK 171
Query: 128 HIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+R + K+ K S ++PL + +S+ + + + KRR
Sbjct: 172 DVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRR 211
>BC029385-1|AAH29385.1| 450|Homo sapiens CEP57 protein protein.
Length = 450
Score = 33.9 bits (74), Expect = 0.71
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -2
Query: 695 NIPFIVSKSTAPSHNIGVNIQQVLNGLK 612
++PF+ KST+PSH + N+Q VL+ +K
Sbjct: 288 DMPFVAGKSTSPSHAVVANVQLVLHLMK 315
>BC001233-1|AAH01233.1| 500|Homo sapiens centrosomal protein 57kDa
protein.
Length = 500
Score = 33.9 bits (74), Expect = 0.71
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -2
Query: 695 NIPFIVSKSTAPSHNIGVNIQQVLNGLK 612
++PF+ KST+PSH + N+Q VL+ +K
Sbjct: 288 DMPFVAGKSTSPSHAVVANVQLVLHLMK 315
>AY239292-1|AAP72184.1| 500|Homo sapiens proliferation-inducing
protein 8 protein.
Length = 500
Score = 33.9 bits (74), Expect = 0.71
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -2
Query: 695 NIPFIVSKSTAPSHNIGVNIQQVLNGLK 612
++PF+ KST+PSH + N+Q VL+ +K
Sbjct: 288 DMPFVAGKSTSPSHAVVANVQLVLHLMK 315
>AY225092-1|AAO73938.1| 500|Homo sapiens translokin protein.
Length = 500
Score = 33.9 bits (74), Expect = 0.71
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -2
Query: 695 NIPFIVSKSTAPSHNIGVNIQQVLNGLK 612
++PF+ KST+PSH + N+Q VL+ +K
Sbjct: 288 DMPFVAGKSTSPSHAVVANVQLVLHLMK 315
>BC038294-1|AAH38294.1| 303|Homo sapiens C10orf46 protein protein.
Length = 303
Score = 31.5 bits (68), Expect = 3.8
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -2
Query: 263 QSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKAS 93
QS +Y + YE I C+ + Q H EQ +L K++ + H+ +V KE +AS
Sbjct: 150 QSPGDYIPI--SYEQIYSCVYKCVCQQHSEQMYSDLIKKITN---HLERVSKELQAS 201
>AY743663-1|AAU89709.1| 306|Homo sapiens cullin protein.
Length = 306
Score = 31.5 bits (68), Expect = 3.8
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -2
Query: 263 QSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKAS 93
QS +Y + YE I C+ + Q H EQ +L K++ + H+ +V KE +AS
Sbjct: 150 QSPGDYIPI--SYEQIYSCVYKCVCQQHSEQMYSDLIKKITN---HLERVSKELQAS 201
>AL139407-1|CAH73727.1| 246|Homo sapiens chromosome 10 open reading
frame 46 protein.
Length = 246
Score = 31.5 bits (68), Expect = 3.8
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -2
Query: 263 QSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKAS 93
QS +Y + YE I C+ + Q H EQ +L K++ + H+ +V KE +AS
Sbjct: 27 QSPGDYIPI--SYEQIYSCVYKCVCQQHSEQMYSDLIKKITN---HLERVSKELQAS 78
>AK130194-1|BAC85302.1| 158|Homo sapiens protein ( Homo sapiens
cDNA FLJ26684 fis, clone MPG06358. ).
Length = 158
Score = 31.5 bits (68), Expect = 3.8
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 245 HIRLDSVLLPDF-LHAP*MWRHQNHPDRRSGCTSKCRSN 358
H D V PD L AP W H N P CT C SN
Sbjct: 65 HCPKDEVYAPDHGLQAPASWCHPNLPAHLHPCTPGCLSN 103
>AK097728-1|BAC05153.1| 246|Homo sapiens protein ( Homo sapiens
cDNA FLJ40409 fis, clone TESTI2037723. ).
Length = 246
Score = 31.5 bits (68), Expect = 3.8
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -2
Query: 263 QSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKAS 93
QS +Y + YE I C+ + Q H EQ +L K++ + H+ +V KE +AS
Sbjct: 27 QSPGDYIPI--SYEQIYSCVYKCVCQQHSEQMYSDLIKKITN---HLERVSKELQAS 78
>AJ544771-1|CAD67614.1| 369|Homo sapiens hypothetical protein
protein.
Length = 369
Score = 31.5 bits (68), Expect = 3.8
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -2
Query: 263 QSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKAS 93
QS +Y + YE I C+ + Q H EQ +L K++ + H+ +V KE +AS
Sbjct: 150 QSPGDYIPI--SYEQIYSCVYKCVCQQHSEQMYSDLIKKITN---HLERVSKELQAS 201
>U63610-1|AAB05428.1| 4574|Homo sapiens plectin protein.
Length = 4574
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1490 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1548
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1549 KAETEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1589
>U53204-1|AAB05427.1| 4574|Homo sapiens plectin protein.
Length = 4574
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1490 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1548
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1549 KAETEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1589
>L40157-1|AAA79121.1| 1410|Homo sapiens endosome-associated protein
protein.
Length = 1410
Score = 30.7 bits (66), Expect = 6.6
Identities = 23/108 (21%), Positives = 47/108 (43%)
Frame = -2
Query: 332 LTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELS 153
L +R+D G G + Q + +L E + + +K + H +Q +E L
Sbjct: 542 LEKEREDLYAKIQAGEGETAVLNQLQEKNHTLQDEVTQLTENVKNQS-ESH-KQAQENLH 599
Query: 152 KELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
++ ++ H+R + S L + + ++ +V L+IQIK +
Sbjct: 600 DQVQEQKAHLRAAQDRVLSLETSVNELNSQLNESKEKVSQLDIQIKAK 647
>L02785-1|AAA58443.1| 764|Homo sapiens DRA protein.
Length = 764
Score = 30.7 bits (66), Expect = 6.6
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 385 LGTIPSPSRYKFKSLLYDMYL*EGRRNIRCPSLITF 492
L I + YK K YDMY EG + RCPS I F
Sbjct: 511 LANIGRTNIYKNKKDYYDMYEPEGVKIFRCPSPIYF 546
>BC025671-1|AAH25671.1| 764|Homo sapiens solute carrier family 26,
member 3 protein.
Length = 764
Score = 30.7 bits (66), Expect = 6.6
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 385 LGTIPSPSRYKFKSLLYDMYL*EGRRNIRCPSLITF 492
L I + YK K YDMY EG + RCPS I F
Sbjct: 511 LANIGRTNIYKNKKDYYDMYEPEGVKIFRCPSPIYF 546
>AY480051-1|AAR95684.1| 4547|Homo sapiens plectin 11 protein.
Length = 4547
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1463 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1521
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1522 KAEAEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1562
>AY480050-1|AAR95683.1| 4551|Homo sapiens plectin 10 protein.
Length = 4551
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1467 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1525
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1526 KAEAEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1566
>AY480049-1|AAR95682.1| 4547|Homo sapiens plectin 8 protein.
Length = 4547
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1463 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1521
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1522 KAEAEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1562
>AY480048-1|AAR95681.1| 4515|Homo sapiens plectin 7 protein.
Length = 4515
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1431 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1489
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1490 KAEAEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1530
>AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein.
Length = 4684
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1600 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1658
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1659 KAEAEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1699
>AY480046-1|AAR95679.1| 4525|Homo sapiens plectin 3 protein.
Length = 4525
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1441 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1499
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1500 KAEAEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1540
>AY480045-1|AAR95678.1| 4533|Homo sapiens plectin 2 protein.
Length = 4533
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1449 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1507
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1508 KAEAEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1548
>AY480044-1|AAR95677.1| 4574|Homo sapiens plectin 1 protein.
Length = 4574
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 302 ATSKGRGGSQEAKQSL---AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASRE 132
AT + RGG++ Q+L AE A + E Q QRK + ELASR
Sbjct: 1490 ATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDE-SQRKRQAEVELASRV 1548
Query: 131 EHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKRR 9
+ + +E + + + + LR A E R++ ++ R+
Sbjct: 1549 KAEAEAAREKQRALQALEELRLQAEEAERRLRQAEVERARQ 1589
>AC002467-3|AAB88772.1| 327|Homo sapiens unknown protein.
Length = 327
Score = 30.7 bits (66), Expect = 6.6
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 385 LGTIPSPSRYKFKSLLYDMYL*EGRRNIRCPSLITF 492
L I + YK K YDMY EG + RCPS I F
Sbjct: 74 LANIGRTNIYKNKKDYYDMYEPEGVKIFRCPSPIYF 109
>BC021134-1|AAH21134.1| 903|Homo sapiens centrobin, centrosomal
BRCA2 interacting protein protein.
Length = 903
Score = 30.3 bits (65), Expect = 8.8
Identities = 20/90 (22%), Positives = 42/90 (46%)
Frame = -2
Query: 278 SQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 99
+Q + SL + ASL RE+ + G +Q L + + E+A REE ++V ++++
Sbjct: 464 AQAQESSLRQAASL-REHHRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYE 522
Query: 98 ASGDSEQPLRASASTTEXRVQALNIQIKRR 9
EQ + +++ +++ R
Sbjct: 523 LRLAREQARVCELQSGNQQLEEQRVELVER 552
>BC014055-1|AAH14055.3| 805|Homo sapiens CNTROB protein protein.
Length = 805
Score = 30.3 bits (65), Expect = 8.8
Identities = 20/90 (22%), Positives = 42/90 (46%)
Frame = -2
Query: 278 SQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 99
+Q + SL + ASL RE+ + G +Q L + + E+A REE ++V ++++
Sbjct: 365 AQAQESSLRQAASL-REHHRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYE 423
Query: 98 ASGDSEQPLRASASTTEXRVQALNIQIKRR 9
EQ + +++ +++ R
Sbjct: 424 LRLAREQARVCELQSGNQQLEEQRVELVER 453
>AY160227-1|AAO22136.1| 925|Homo sapiens centrobin beta protein.
Length = 925
Score = 30.3 bits (65), Expect = 8.8
Identities = 20/90 (22%), Positives = 42/90 (46%)
Frame = -2
Query: 278 SQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 99
+Q + SL + ASL RE+ + G +Q L + + E+A REE ++V ++++
Sbjct: 464 AQAQESSLRQAASL-REHHRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYE 522
Query: 98 ASGDSEQPLRASASTTEXRVQALNIQIKRR 9
EQ + +++ +++ R
Sbjct: 523 LRLAREQARVCELQSGNQQLEEQRVELVER 552
>AY160226-1|AAO22135.1| 903|Homo sapiens centrobin alpha protein.
Length = 903
Score = 30.3 bits (65), Expect = 8.8
Identities = 20/90 (22%), Positives = 42/90 (46%)
Frame = -2
Query: 278 SQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 99
+Q + SL + ASL RE+ + G +Q L + + E+A REE ++V ++++
Sbjct: 464 AQAQESSLRQAASL-REHHRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYE 522
Query: 98 ASGDSEQPLRASASTTEXRVQALNIQIKRR 9
EQ + +++ +++ R
Sbjct: 523 LRLAREQARVCELQSGNQQLEEQRVELVER 552
>AL162458-1|CAH74052.1| 579|Homo sapiens nuclear receptor
coactivator 5 protein.
Length = 579
Score = 30.3 bits (65), Expect = 8.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 197 GPYQPHLEQR-KEELSKELASREEHIRKVVKEFKASGDSEQPLRAS 63
GP P + R KE L +E REE R+ +E + D+E+P+ S
Sbjct: 156 GPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCS 201
>AL035662-2|CAI42972.1| 579|Homo sapiens nuclear receptor
coactivator 5 protein.
Length = 579
Score = 30.3 bits (65), Expect = 8.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 197 GPYQPHLEQR-KEELSKELASREEHIRKVVKEFKASGDSEQPLRAS 63
GP P + R KE L +E REE R+ +E + D+E+P+ S
Sbjct: 156 GPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCS 201
>AL035662-1|CAI42971.1| 104|Homo sapiens nuclear receptor
coactivator 5 protein.
Length = 104
Score = 30.3 bits (65), Expect = 8.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 197 GPYQPHLEQR-KEELSKELASREEHIRKVVKEFKASGDSEQPLRAS 63
GP P + R KE L +E REE R+ +E + D+E+P+ S
Sbjct: 51 GPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCS 96
>AK074847-1|BAC11241.1| 432|Homo sapiens protein ( Homo sapiens
cDNA FLJ90366 fis, clone NT2RP2004141. ).
Length = 432
Score = 30.3 bits (65), Expect = 8.8
Identities = 20/90 (22%), Positives = 42/90 (46%)
Frame = -2
Query: 278 SQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 99
+Q + SL + ASL RE+ + G +Q L + + E+A REE ++V ++++
Sbjct: 32 AQAQESSLRQAASL-REHHRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYE 90
Query: 98 ASGDSEQPLRASASTTEXRVQALNIQIKRR 9
EQ + +++ +++ R
Sbjct: 91 LRLAREQARVCELQSGNQQLEEQRVELVER 120
>AF470686-1|AAO33457.1| 579|Homo sapiens estrogen receptor
coactivator protein.
Length = 579
Score = 30.3 bits (65), Expect = 8.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 197 GPYQPHLEQR-KEELSKELASREEHIRKVVKEFKASGDSEQPLRAS 63
GP P + R KE L +E REE R+ +E + D+E+P+ S
Sbjct: 156 GPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCS 201
>AF331638-1|AAL56068.2| 903|Homo sapiens PP1221 protein.
Length = 903
Score = 30.3 bits (65), Expect = 8.8
Identities = 20/90 (22%), Positives = 42/90 (46%)
Frame = -2
Query: 278 SQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 99
+Q + SL + ASL RE+ + G +Q L + + E+A REE ++V ++++
Sbjct: 464 AQAQESSLRQAASL-REHHRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYE 522
Query: 98 ASGDSEQPLRASASTTEXRVQALNIQIKRR 9
EQ + +++ +++ R
Sbjct: 523 LRLAREQAQVCELQSGNQQLEEQRVELVER 552
>AF230533-1|AAG36793.1| 621|Homo sapiens nuclear receptor
coactivator CIA protein.
Length = 621
Score = 30.3 bits (65), Expect = 8.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 197 GPYQPHLEQR-KEELSKELASREEHIRKVVKEFKASGDSEQPLRAS 63
GP P + R KE L +E REE R+ +E + D+E+P+ S
Sbjct: 198 GPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCS 243
>AB046857-1|BAB13463.1| 479|Homo sapiens KIAA1637 protein protein.
Length = 479
Score = 30.3 bits (65), Expect = 8.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 197 GPYQPHLEQR-KEELSKELASREEHIRKVVKEFKASGDSEQPLRAS 63
GP P + R KE L +E REE R+ +E + D+E+P+ S
Sbjct: 56 GPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCS 101
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,839,265
Number of Sequences: 237096
Number of extensions: 2636740
Number of successful extensions: 12278
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 11760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12277
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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