Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o08
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 33 0.32
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 33 0.32
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 33 0.32
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 33 0.32
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 33 0.32
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 33 0.32
AF047655-6|AAC04398.1| 195|Caenorhabditis elegans Hypothetical ... 32 0.57
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 31 1.3
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 30 2.3
AC006617-11|AAF39766.2| 356|Caenorhabditis elegans Serpentine r... 30 2.3
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 29 3.0
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 29 4.0
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81073-9|CAB03030.2| 583|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z79752-7|CAC70084.1| 583|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 5.3
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 29 5.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 5.3
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 28 7.0
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 7.0
AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger t... 28 7.0
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 28 9.2
AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical ... 28 9.2
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = -2
Query: 335 NLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEEL 156
+L ++D ATSK + +++ AE ASL R +E+ ++ + + K E
Sbjct: 56 DLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEE 115
Query: 155 SKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQA 33
+ E +RKV+ E ++ D E+ A E ++ A
Sbjct: 116 ATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLA 155
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = -2
Query: 335 NLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEEL 156
+L ++D ATSK + +++ AE ASL R +E+ ++ + + K E
Sbjct: 56 DLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEE 115
Query: 155 SKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQA 33
+ E +RKV+ E ++ D E+ A E ++ A
Sbjct: 116 ATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLA 155
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = -2
Query: 335 NLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEEL 156
+L ++D ATSK + +++ AE ASL R +E+ ++ + + K E
Sbjct: 56 DLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEE 115
Query: 155 SKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQA 33
+ E +RKV+ E ++ D E+ A E ++ A
Sbjct: 116 ATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLA 155
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = -2
Query: 335 NLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEEL 156
+L ++D ATSK + +++ AE ASL R +E+ ++ + + K E
Sbjct: 56 DLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEE 115
Query: 155 SKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQA 33
+ E +RKV+ E ++ D E+ A E ++ A
Sbjct: 116 ATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLA 155
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = -2
Query: 335 NLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEEL 156
+L ++D ATSK + +++ AE ASL R +E+ ++ + + K E
Sbjct: 56 DLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEE 115
Query: 155 SKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQA 33
+ E +RKV+ E ++ D E+ A E ++ A
Sbjct: 116 ATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLA 155
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = -2
Query: 335 NLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEEL 156
+L ++D ATSK + +++ AE ASL R +E+ ++ + + K E
Sbjct: 56 DLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEE 115
Query: 155 SKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQA 33
+ E +RKV+ E ++ D E+ A E ++ A
Sbjct: 116 ATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLA 155
>AF047655-6|AAC04398.1| 195|Caenorhabditis elegans Hypothetical
protein C17B7.4 protein.
Length = 195
Score = 31.9 bits (69), Expect = 0.57
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Frame = -2
Query: 416 LYREGDGIVPRF---LKAINRPHYFYTSMYNLTADRDDFDGATSKG-RGGSQEAKQSL-- 255
LYR GD + + +K+ N + F TS ++ + F+ +K S++ ++S
Sbjct: 47 LYRFGDFMTKMYFLDVKSPNSMNKFKTSCLSMADCTESFECQNNKEPTDSSKKVRESCET 106
Query: 254 -----AEYASLYREYEHIE---KCIKE-GPYQPHLEQRK--EELSKELASREEHIRKVVK 108
++ + + E ++ +C K GP+ + + K +EL K + ++ ++K+V
Sbjct: 107 LNFLGTDFITCLTKLEELKPAPECYKTWGPFDGFIIKDKLPDELCKNMVGKDNCMKKLVS 166
Query: 107 EFKASGDSEQPLRASASTTEXR 42
E DS++ L +TTE R
Sbjct: 167 ETCGEEDSQKLLNMLKNTTEYR 188
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = -2
Query: 191 YQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKR 12
Y+ E+RKEE ++E REE K++ E K + E+ + A E +++ LN +++
Sbjct: 889 YRKREEKRKEEEAEEERKREE--EKLIAERKRIEEVEEQRKREAEDKE-KIEQLNAKVRE 945
Query: 11 R 9
+
Sbjct: 946 K 946
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = -3
Query: 283 EEVRKQNRV*PNMLAYIESMSISRNASKKVRTSRTLSNGR-RNYLK--SWLLEKNTFERS 113
++VR++++ + + S S SR S++ R SR R R+ LK +EK E++
Sbjct: 61 KKVRRRSKTWSSSRSRSRSRSRSRGRSQERRRSRKSRKSRSRSRLKHREEKIEKKNLEKA 120
Query: 112 SRSSKRPGTLSSRSGRPRPLQKXGYRHSTFKLNVG 8
++ P S+ +G+P+ ++ + L +G
Sbjct: 121 PKNELIPQAPSTENGKPKEFKEPPRKDEADDLPLG 155
>AC006617-11|AAF39766.2| 356|Caenorhabditis elegans Serpentine
receptor, class z protein56 protein.
Length = 356
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 254 AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKE 147
A +A++ Y H CI + P HL+ RK +L +E
Sbjct: 319 AVHATVCNSYFHYVICISDWPSGKHLKSRKPDLKRE 354
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 308 DGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCI-KEGPYQPHLEQRKEELSKELASRE 132
+G T++ + AK + L + +E+ + +E Y+ LEQ K +L EL +
Sbjct: 1008 EGLTTQLLDHEERAKHGVKAKGRLENQLHELEQDLNRERQYKSELEQHKRKLLAELEDSK 1067
Query: 131 EHI 123
+H+
Sbjct: 1068 DHL 1070
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -2
Query: 275 QEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKA 96
Q+ +Q ++ + + P Q H E+ + L + EEH R+ +E +A
Sbjct: 676 QDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQEEESRA 735
Query: 95 SGDSEQPLRAS-ASTTEXRVQ 36
+ L AS +TE Q
Sbjct: 736 RALQQSLLHASQVESTEVTFQ 756
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -2
Query: 275 QEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKA 96
Q+ +Q ++ + + P Q H E+ + L + EEH R+ +E +A
Sbjct: 676 QDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQEEESRA 735
Query: 95 SGDSEQPLRAS-ASTTEXRVQ 36
+ L AS +TE Q
Sbjct: 736 RALQQSLLHASQVESTEVTFQ 756
>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
protein D1044.6 protein.
Length = 1009
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 230 EYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 99
E EH + KE +Q LE R+E L K REEH ++ +E +
Sbjct: 361 EREHNLRIEKER-HQKELEFRREALRKREQEREEHKKRAQEELR 403
>Z81073-9|CAB03030.2| 583|Caenorhabditis elegans Hypothetical
protein F30F8.2 protein.
Length = 583
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 515 VAQLHFLYRKWKRDPTPCD 571
V L ++ KW+ DP PCD
Sbjct: 529 VVTLEYVLSKWQEDPNPCD 547
>Z79752-7|CAC70084.1| 583|Caenorhabditis elegans Hypothetical
protein F30F8.2 protein.
Length = 583
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 515 VAQLHFLYRKWKRDPTPCD 571
V L ++ KW+ DP PCD
Sbjct: 529 VVTLEYVLSKWQEDPNPCD 547
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -1
Query: 426 TLEFI-SRGRRYRSEVLESDQ-PTALLLHFDVQPDRRSG*F*W 304
T+E I ++G++YRS +L +DQ PTA++ + D G W
Sbjct: 1905 TIEIIRTQGKQYRSVILSNDQSPTAVVTPVAIAVDADKGYVFW 1947
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 257 LAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELAS 138
+ ++ L Y ++ P+ PHL R + ++KELAS
Sbjct: 381 IGDFGKLCVPYVFRKEAKNINPFSPHLRDRTKRIAKELAS 420
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -1
Query: 426 TLEFI-SRGRRYRSEVLESDQ-PTALLLHFDVQPDRRSG*F*W 304
T+E I ++G++YRS +L +DQ PTA++ + D G W
Sbjct: 1905 TIEIIRTQGKQYRSVILSNDQSPTAVVTPVAIAVDADKGYVFW 1947
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -3
Query: 307 MAPHLRGVEEVRKQNRV*PNMLAYIESMSISRNASKKVRTSRTLSNGRRN--YLKSWLLE 134
+A + ++ + QNR L YI+SM + + A S S G ++ L++
Sbjct: 381 LAQQAQQQQQGQSQNRTVSQALQYIQSMQLQQRADGTPNGSTRTSPGPKDSRMLQAASRS 440
Query: 133 KNTFERSSRSSKRPGTLSSRSGRPRPLQ 50
++ FE S S G+L+S RP+Q
Sbjct: 441 QSLFELSG-SKHFMGSLTSGQPLLRPIQ 467
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Frame = -2
Query: 398 GIVPRFLKAINRPHYFYTSMYNLTADRDDFDGATSKGRGGSQEAKQSLAEYAS------L 237
G VPR LKA+ H+F + ++ D D RG + A Y +
Sbjct: 291 GGVPRPLKAVELAHFFEQTYGHVVCVGIDIDNKFKYPRGSGRVAFSDYDAYVQAITDRYI 350
Query: 236 YREYEHIEKCIKEGPYQPHLEQRKEELS 153
++E I K ++ PY H Q EE S
Sbjct: 351 VLDHEDIHKRVEIKPYFFH-NQSCEECS 377
>AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 909
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -3
Query: 307 MAPHLRGVEEVRKQNRV*PNMLAYIESMSISRNASKKVRTSRTLSNGRRN--YLKSWLLE 134
+A + ++ + QNR L YI+SM + + A S S G ++ L++
Sbjct: 381 LAQQAQQQQQGQSQNRTVSQALQYIQSMQLQQRADGTPNGSTRTSPGPKDSRMLQAASRS 440
Query: 133 KNTFERSSRSSKRPGTLSSRSGRPRPLQ 50
++ FE S S G+L+S RP+Q
Sbjct: 441 QSLFELSG-SKHFMGSLTSGQPLLRPIQ 467
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/87 (19%), Positives = 37/87 (42%)
Frame = -2
Query: 293 KGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKV 114
K + ++ E+ +R+ E K +++ ++ +Q+KE L + R +HI +
Sbjct: 256 KNEDRERATQKERREHIERHRQAEARAKALEKEKHEQEEKQKKENLERAEKERHDHIERQ 315
Query: 113 VKEFKASGDSEQPLRASASTTEXRVQA 33
+ + EQ + E R +A
Sbjct: 316 RQAEARAKALEQEKQEEKQKNEDRERA 342
>AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical
protein Y53F4B.5 protein.
Length = 144
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -2
Query: 275 QEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREE--HIRKVVKEF 102
Q+ +QSLA EHI K +K+ P+ +R KE+ +E H K
Sbjct: 37 QQQQQSLASEMIARDRLEHIVKHVKKYPFNCPYCRRLFASQKEVDGHQENRHAELDWKSV 96
Query: 101 KASGDSEQPLRASASTTE 48
+ + EQ R S S E
Sbjct: 97 EPFAEEEQIYRRSRSIYE 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,010
Number of Sequences: 27780
Number of extensions: 415587
Number of successful extensions: 1392
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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