Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o08
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   4.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   4.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 569 HMGLGHVSTYGTRSATAQPSLDNREI 492
           H G+  VS YGT      P L  +E+
Sbjct: 10  HFGVDDVSLYGTPKEEPGPGLPGQEV 35


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 569 HMGLGHVSTYGTRSATAQPSLDNREI 492
           H G+  VS YGT      P L  +E+
Sbjct: 10  HFGVDDVSLYGTPKEEPGPGLPGQEV 35


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 569 HMGLGHVSTYGTRSATAQPSLDNREI 492
           H G+  VS YGT      P L  +E+
Sbjct: 10  HFGVDDVSLYGTPKEEPGPGLPGQEV 35


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 219 YREMHQRRSVPA 184
           YREM +R+SVPA
Sbjct: 396 YREMEKRQSVPA 407


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 464 LRLPSYKYMSYNRLLNLYREGDGIVPRFLKAINRPHY-FYTSM 339
           L++P    +S   + +L  EGD   P  ++     HY  YT+M
Sbjct: 737 LQIPRASLVSTTSVKSLRLEGDETPPYGMELTEAEHYALYTAM 779


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 501 IVQRRLRSCTSCTVS 545
           I  RRLRS T+C VS
Sbjct: 63  ITTRRLRSVTNCFVS 77


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 560 TPCDERLSMVCRRGVAALSDHSKPAVCLRRCYAKAR 667
           T C+   +   +  VA+ +  SK   C R  Y K R
Sbjct: 67  TKCEGFCNSQVQPSVASTTGFSKECYCCRESYLKER 102


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 560 TPCDERLSMVCRRGVAALSDHSKPAVCLRRCYAKAR 667
           T C+   +   +  VA+ +  SK   C R  Y K R
Sbjct: 67  TKCEGFCNSQVQPSVASTTGFSKECYCCRESYLKER 102


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 151 KSWLLEKNTFERSSRSSKRPGTLSSRSGRPRPLQKXGYRH 32
           K + +  N+    SRS +R  +  SR    R   +  YR+
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRN 247


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 151 KSWLLEKNTFERSSRSSKRPGTLSSRSGRPRPLQKXGYRH 32
           K + +  N+    SRS +R  +  SR    R   +  YR+
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRN 247


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 151 KSWLLEKNTFERSSRSSKRPGTLSSRSGRPRPLQKXGYRH 32
           K + +  N+    SRS +R  +  SR    R   +  YR+
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRN 247


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 151 KSWLLEKNTFERSSRSSKRPGTLSSRSGRPRPLQKXGYRH 32
           K + +  N+    SRS +R  +  SR    R   +  YR+
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRN 247


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 151 KSWLLEKNTFERSSRSSKRPGTLSSRSGRPRPLQKXGYRH 32
           K + +  N+    SRS +R  +  SR    R   +  YR+
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRN 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,843
Number of Sequences: 438
Number of extensions: 5569
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)