Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o07
         (255 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    28   1.2  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 26   4.8  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 26   4.8  
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506...    25   6.4  

>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 163 MITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALVS 20
           +ITDI+    +  L V +F   +  H +NA SS+ ++   A VK LVS
Sbjct: 438 LITDIEKIAEAAFLMVVVFSAEVTKHRLNAKSSEGFQPDVA-VKILVS 484


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 214  LIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 122
            L+H+ +  I FK  +   + D  L  FSNIL
Sbjct: 1010 LLHSVDGSINFKPFDFDKLADDMLQEFSNIL 1040


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 214  LIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 122
            L+H+ +  I FK  +   + D  L  FSNIL
Sbjct: 1011 LLHSVDGSINFKPFDFDKLADDMLQEFSNIL 1041


>09_04_0163 -
           15249816-15249920,15250032-15250163,15250463-15250629,
           15251259-15251448,15252530-15252661,15253275-15253382,
           15253513-15253608,15253702-15253809,15253917-15254089,
           15255026-15255401,15255887-15256030,15256125-15256799,
           15256917-15256982,15257082-15257249
          Length = 879

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 176 IQSKNDHRHPARSFLQHFGSLHILISY 96
           ++ KND+      F QHFGS   LIS+
Sbjct: 181 LEIKNDNDAGKHFFHQHFGSTKPLISF 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,088,867
Number of Sequences: 37544
Number of extensions: 97144
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)