Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o07
         (255 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   4.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     20   5.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   9.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   9.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   9.6  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
          protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 53 VNRGHCKSIGVSNKKM 6
          ++RGHC  IG   K++
Sbjct: 41 LDRGHCDVIGKKIKEL 56


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 205 NFNNLIQFKTSNL 167
           N NN+  FK SN+
Sbjct: 159 NGNNITNFKNSNI 171


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 211 IHNFNNLIQFKTSNLKMITDIQLAVF 134
           IH  +  IQ + S +KM++ + +  F
Sbjct: 255 IHGDSRQIQSRKSVIKMLSAVVILFF 280


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 144 SWMSVIIFRLDVLN*IKLL 200
           SW+  I   LDVL  I+ L
Sbjct: 695 SWLERIQIALDVLEGIRYL 713


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 144 SWMSVIIFRLDVLN*IKLL 200
           SW+  I   LDVL  I+ L
Sbjct: 733 SWLERIQIALDVLEGIRYL 751


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 1   KHIFLLETPMLLQWPRLTYIIWNYSHLCSDTG 96
           + +FL   P LL   R  Y    Y     D+G
Sbjct: 351 RQVFLNWMPRLLMMRRTPYSTPEYDDTYMDSG 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,730
Number of Sequences: 438
Number of extensions: 1117
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)