Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o06
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 26 3.8
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 3.8
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 25 5.0
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.7
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 25 6.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 6.7
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 6.7
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 25 6.7
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 6.7
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 25 8.8
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 511 YQSKCQLTNVQNA*LKKLNKNEMEIIQKTRSKCVKYQHWL 392
Y S+ QL ++ L LN+ E+ I + RSK + W+
Sbjct: 149 YDSQHQLCIEEDRTLAYLNRQELAIPKTLRSKSIPQHSWV 188
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 429 RLDRNV*NINIGSLHLRSNNIQTVMVHSYG 340
+LD V N + SLHLRS+ +QT + H G
Sbjct: 245 QLDGKV-NPLVTSLHLRSSALQTALFHPDG 273
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 312 DDITPVDQSSHTNEP 356
+D+ PVD SH NEP
Sbjct: 286 EDLDPVDSISHMNEP 300
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -3
Query: 224 PTRMFPKLKLIATILSVPPQI---HMLVLLH 141
P FP LK+ T +PP++ +M+++LH
Sbjct: 512 PPHFFPVLKMFLTNEHLPPKLSPWNMMIVLH 542
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 350 IRMGTLIHWSYIIGSAIYPKNTNGCIALSGSCFAFVIIGSVLPTR 216
I GT+I + IGSA Y TNG + + + +G +L R
Sbjct: 182 IGRGTMILLNDRIGSAFYTTKTNGNMLDTFKSYEAGFLGMILDQR 226
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 37 SKTQPSTLXDAKVNPLYARIAFVKVSFSIRAATLLC-SSTNM*ICGGTLSIVAISFNLGN 213
S+T + L D+K+ A +F S S+R++T++ S T G SI + SF+ G+
Sbjct: 110 SETLDNKLNDSKILIKKASNSFANFSESVRSSTIVAYSQTPTQRLQGLTSISSSSFDDGS 169
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 218 RMFPKLKLIATILSVPPQIHMLVLL 144
R F KLKL +++VP + M++L+
Sbjct: 557 RSFTKLKLFILLIAVPFALPMIILI 581
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 350 IRMGTLIHWSYIIGSAIYPKNTNGCIALSGSCFAFVIIGSVLPTR 216
I GT+I + IGSA Y TNG + + + +G +L R
Sbjct: 182 IGRGTMILLNDRIGSAFYTTKTNGNMLDTFKSYEAGFLGMILDQR 226
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 206 KLKLIATILSVPPQIHMLVLLHRSVAARIENETLTKAIRAYSGLTLASXSVDGCV 42
K K ++ +L IH L R + E+ TL+ +Y L L S +V C+
Sbjct: 91 KAKGVSVVLGPTVNIHRGPLNGRGFESFSEDSTLSGLAASYVILGLQSKNVQACI 145
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 8.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 47 NRPHXLMLKSIRYTLVLPSLKFRFR 121
N P K +++T++ ++ FRFR
Sbjct: 401 NHPDKKSYKGVKHTIIAQNVSFRFR 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,694
Number of Sequences: 5004
Number of extensions: 44187
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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