Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o06
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0092 - 1119203-1119502,1119612-1120412                           29   1.7  
05_06_0241 - 26634632-26636263                                         29   1.7  
08_02_0536 - 18302394-18302826,18302903-18303183,18303480-183037...    29   2.9  
05_05_0082 + 22252993-22255617                                         28   3.8  
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842     28   3.8  
03_06_0678 - 35480711-35484658                                         28   5.1  
01_06_1638 + 38812226-38812660,38812989-38813063,38813180-388132...    28   5.1  
08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38...    27   8.8  

>10_01_0092 - 1119203-1119502,1119612-1120412
          Length = 366

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 43  TQPSTLXDAKVNPLYARIAFVKVSFSIRAATLLCSSTNM*ICGGTLSIVAISFNLG 210
           T    L  A++   +   AF+K S ++RAAT LC S  +   GG  ++  ++ N+G
Sbjct: 13  TSTDDLIQAEIELYHHCFAFIK-STALRAATDLCISDAIHRNGGAATLSDLALNIG 67


>05_06_0241 - 26634632-26636263
          Length = 543

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 176 VPPQIHMLVLLHRSVAARIENETLTKAIRAYSGLTLASXSVD-GCVFDA 33
           +PP+ H  V LH+++A   + + L   I+    L + + +   GC  DA
Sbjct: 102 LPPRYHRSVQLHKTIAYNGDAKALVATIKRQERLAMRNMAASIGCFLDA 150


>08_02_0536 -
           18302394-18302826,18302903-18303183,18303480-18303747,
           18303959-18303996,18304459-18304761
          Length = 440

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 410 KISTLALFICGPIIYKLLWF--IRMGTLIHWSYIIGSAI 300
           +  TLAL I   ++   LWF  + +GT ++W+ + GS I
Sbjct: 395 RYETLALLIFSSVLAVDLWFWELLVGTAVNWASLAGSWI 433


>05_05_0082 + 22252993-22255617
          Length = 874

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 335 LIHWSYIIGSAIYPKNTNGCIALSGSCFAFVIIGSVLPTRMFPKLKLIATILSVPPQIHM 156
           ++ W+ II   I     NG I L+   F+ +    V+P        L A++  +PPQIH 
Sbjct: 369 VVSWTAIISGCIQ----NGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHA 424

Query: 155 LVL 147
            V+
Sbjct: 425 QVI 427


>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
          Length = 355

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 413 CKISTLALFICGPIIYKLLWFIRMGTLIHWSYIIGSAIYPKNTNGCIAL 267
           C++  L + ICGP I K+L     G  IH S +  S +Y ++  G +++
Sbjct: 99  CQVGLLDIDICGPSIPKMLGL--EGQDIHQSNLGWSPVYVESNLGVMSI 145


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 217 RVGRTLPMITNAKQLPLNAMHPLVFLGYIAEPMI*LQWIKVPIRMNHNSLYIIGPQMKRA 396
           R+G  L MI NA ++ +  M+   F      PM  ++W K   ++++ S+ I     K+ 
Sbjct: 119 RMGNKLRMILNAIEVLIAEMNAFRFKFRPEPPMSSIKWRKTDSKISNLSMDIANKSRKKD 178

Query: 397 NVDILH 414
             +I++
Sbjct: 179 KEEIVN 184


>01_06_1638 +
           38812226-38812660,38812989-38813063,38813180-38813284,
           38813387-38813472,38813554-38813674,38813761-38813840,
           38814005-38814067,38814205-38814326,38814429-38814514,
           38814626-38814750,38814883-38814911,38815188-38815333,
           38815643-38815822,38816445-38816585
          Length = 597

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 5   FLPHIYISISHQRHNRPHXLMLKSIRYTLVLPSLKFRFRFEPPHSYAVVPTC 160
           F+ +  +  +H  H +       +IRY  + PSLK + R  PP   A++  C
Sbjct: 387 FILYEMVEGTHTVHGKSSEESGHTIRYDGMRPSLKNKLRGYPPDFKALIEEC 438


>08_01_0058 +
           388989-389102,389226-389337,389457-389483,389787-389859,
           389958-390061,390144-390358,390429-390528,390739-390805,
           391628-391716,391810-391948,392057-392157,392921-393088,
           393302-393510
          Length = 505

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 2   FFLPHIYISISHQRHNRPHXLMLKSIRYTLVLPSLKFRFRFEPPHSYAVVP 154
           F   H  +   HQ H+     +   + +   LPS   R  + P  S+ V+P
Sbjct: 197 FVCQHTLVKAEHQNHDESKPPVRAHLFHDETLPSFFRRLAWSPDGSFLVLP 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,058,175
Number of Sequences: 37544
Number of extensions: 262963
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)