Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o06
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    33   0.12 
Z82060-5|CAB04886.1|  257|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine r...    28   3.4  

>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
 Frame = -3

Query: 440 NYTKDSIEMCKISTLALFICGPIIYKLLWFIRMGTLIHWSY-IIGSAIYPKN------TN 282
           NY K +  +  +  L L    P  + ++ F   G   H  Y I GS I+         TN
Sbjct: 142 NYQKINARI--LDWLPLIFIYPFFFTVIMFPGYGYCSHIEYPIFGSIIFRVTGTMFGWTN 199

Query: 281 GCIALSGSCFAFVIIGSVLPTRMFPKLKLIATILSVPPQIHMLVLLHRSVAARIENETLT 102
             + +  + F F I    L   +   +KLI   LSVPP +  L   HR+  +     TLT
Sbjct: 200 NFLLMFNTFFWFSIC---LGFNLVLIVKLIKFKLSVPPSMGSLAS-HRAEISL----TLT 251

Query: 101 KAIRAYSGLTLASXSVDGCVFDAILIYI 18
               ++S LT    +V G +F+ + IY+
Sbjct: 252 TVSMSFSYLTNGMITVFGRLFNNLTIYL 279


>Z82060-5|CAB04886.1|  257|Caenorhabditis elegans Hypothetical
           protein T27F6.7 protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 389 FICGPIIYKLLWFIRMGTLIHWSYIIG 309
           F  G ++  LL+ I +G L+HW  IIG
Sbjct: 92  FDAGTVVASLLFLI-IGVLVHWQVIIG 117


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 435 YKRLDRNV*NINIGSLHLRSNNIQTVMVHSYGNFDPL 325
           Y+RLD +  NI+ G+L  +   + + ++ + G  DPL
Sbjct: 637 YQRLDNSFRNISFGALPFQKGTLHSDVLVNEGGVDPL 673


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 435 YKRLDRNV*NINIGSLHLRSNNIQTVMVHSYGNFDPL 325
           Y+RLD +  NI+ G+L  +   + + ++ + G  DPL
Sbjct: 778 YQRLDNSFRNISFGALPFQKGTLHSDVLVNEGGVDPL 814


>AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine
           receptor, class i protein73 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 440 NYTKDSIEMCKISTLALFICGPIIYKLLWFIRMGTLIHWSYII 312
           NY +  I   K+S  AL++  P+IY +      G L+ +  ++
Sbjct: 169 NYPEHYINFSKLSHFALYVSSPVIYVVFGMAIFGGLLFFVLLL 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,719,134
Number of Sequences: 27780
Number of extensions: 246805
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)