Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o05
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    31   0.25 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    28   1.8  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.2  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   7.2  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   7.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.5  

>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -2

Query: 381 VKRGERVSITRPVLITMERMDFEDIDKTSKSSCEVLIGHVQNAHYTLYKKKKTNNVFIEG 202
           V R    + T    +T+E   F+D D    ++   L+G++ +        +K N+  I+ 
Sbjct: 626 VPRARATTCTTLTYVTVEPSHFQDEDCNESTNMLSLVGYMDSYPEATSNIQKMNSYHIKD 685

Query: 201 S-AENFLLMYCINN 163
           S  ENFL    +NN
Sbjct: 686 SNKENFLSTTKVNN 699


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 790 NLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINN 632
           N+   + T  K   +   +L +GSR  R  RP+++  L   KY R  P   +N
Sbjct: 527 NIGSLRQTKFKQSNYTPPELNDGSRQHRPSRPSKNPSLKKKKYVRTKPKKASN 579


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = -1

Query: 565 DAENVLQGKSSSVLILLVGNAD--EDEEQYKEFSVMGAAQSAGISVENIVDFYSKWRQTS 392
           D +N  +   S   +  VGN D  +DEE+  E+S + A    G+ + N     SK R   
Sbjct: 48  DEDNNEEEYPSLESLKTVGNGDTIQDEEEDFEYSKLQARPLTGLGISNQKP-KSKVRTIQ 106

Query: 391 HKNGKKR*TRVDHETGFDHYGK 326
            +        V+HE     + K
Sbjct: 107 REEVADMLESVEHEKSIQEFRK 128


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 94  SIRLGKLSFLVHIDYKLLNRFIACVL 17
           S+  GK+SF+ H  Y++  RF+  +L
Sbjct: 545 SLNFGKISFISHEFYRVSKRFLDILL 570


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 398 LSPFAVEIYDVFYGNAGRLRC 460
           L PF     +VF G+ GR+RC
Sbjct: 364 LRPFPTRCTNVFIGHKGRVRC 384


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = -1

Query: 799 ELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQI 620
           E DNLK E+ T       LE  L+N    L+  R + S+    +   +++   I++ +  
Sbjct: 330 EFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESNRTIHSQLTD 389

Query: 619 LEF-CNHFVAEDKKTQGSGDA-ENVLQGKSSSV 527
            E   + F  E+K  +GS D  +N L  K   V
Sbjct: 390 AESKLSSFEQENKSLKGSIDEYQNNLSSKDKMV 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,078
Number of Sequences: 5004
Number of extensions: 66137
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)