Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o05
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062     31   0.80 
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    29   5.7  
06_03_0475 - 21217253-21217639,21217717-21218757                       28   9.9  

>05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062
          Length = 456

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 361 VDHETGFDHYGKNGLRGY 308
           ++HE  F HYG+NGLR Y
Sbjct: 437 LEHEDEFGHYGRNGLRDY 454


>01_03_0271 +
           14454681-14456949,14457222-14457476,14458800-14458864,
           14459053-14459171,14459270-14459324
          Length = 920

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 243 LYKKKKTNNVFIEGSAENFLLMYCINNKFLYIG 145
           LYK+ K N +   G    F++  C   K LY+G
Sbjct: 133 LYKRLKLNQIGFNGKTITFVMKSCTELKNLYLG 165


>06_03_0475 - 21217253-21217639,21217717-21218757
          Length = 475

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 97  YSIRLGKLSFLVHIDYKLLNRFIACVLQ 14
           +S  + + + L H+  +LLN F+AC+LQ
Sbjct: 263 FSQVVSRSAVLAHVAQELLNGFVACLLQ 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,460,629
Number of Sequences: 37544
Number of extensions: 375984
Number of successful extensions: 906
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)