Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o05
(799 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007453-1|AAH07453.2| 548|Homo sapiens SMG5 protein protein. 50 7e-06
AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protei... 50 7e-06
AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B pr... 50 7e-06
AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 50 7e-06
AL135927-27|CAI15546.1| 137|Homo sapiens Smg-5 homolog, nonsens... 50 7e-06
AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 50 7e-06
AK027486-1|BAB55147.1| 285|Homo sapiens protein ( Homo sapiens ... 50 7e-06
AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein. 50 7e-06
AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein. 50 7e-06
BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 48 3e-05
AJ406636-1|CAC10700.1| 125|Homo sapiens immunoglobulin heavy ch... 31 3.6
AJ406629-1|CAC10693.1| 92|Homo sapiens immunoglobulin heavy ch... 31 3.6
>BC007453-1|AAH07453.2| 548|Homo sapiens SMG5 protein protein.
Length = 548
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 424 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 481
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 482 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 533
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 534 IKNVLDFYKQWKE 546
>AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protein
protein.
Length = 1016
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 892 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 949
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 950 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 1001
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 1002 IKNVLDFYKQWKE 1014
>AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B
protein.
Length = 1016
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 892 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 949
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 950 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 1001
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 1002 IKNVLDFYKQWKE 1014
>AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 892 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 949
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 950 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 1001
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 1002 IKNVLDFYKQWKE 1014
>AL135927-27|CAI15546.1| 137|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 137
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 13 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 70
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 71 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 122
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 123 IKNVLDFYKQWKE 135
>AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 892 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 949
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 950 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 1001
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 1002 IKNVLDFYKQWKE 1014
>AK027486-1|BAB55147.1| 285|Homo sapiens protein ( Homo sapiens
cDNA FLJ14580 fis, clone NT2RM4001204. ).
Length = 285
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 161 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 218
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 219 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 270
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 271 IKNVLDFYKQWKE 283
>AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein.
Length = 1016
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 892 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 949
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 950 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 1001
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 1002 IKNVLDFYKQWKE 1014
>AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein.
Length = 1033
Score = 50.4 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 909 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 966
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 967 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 1018
Query: 436 VENIVDFYSKWRQ 398
++N++DFY +W++
Sbjct: 1019 IKNVLDFYKQWKE 1031
>BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 48.4 bits (110), Expect = 3e-05
Identities = 36/133 (27%), Positives = 64/133 (48%)
Frame = -1
Query: 796 LDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQIL 617
LD LK+E AR IR+LE + K G+R++R Q+ K K R+ A +IL
Sbjct: 892 LDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQK-EVGKSFERHKLKRQ-DADAWTLYKIL 949
Query: 616 EFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGIS 437
+ C QG+G+ + G + + L + N + + + AA A +
Sbjct: 950 DSCKQLTL----AQGAGEEDP--SGMVTIITGLPLDNPSVLSGPMQ--AALQAAAHASVD 1001
Query: 436 VENIVDFYSKWRQ 398
+++++DFY +W++
Sbjct: 1002 IKDVLDFYKQWKE 1014
>AJ406636-1|CAC10700.1| 125|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 125
Score = 31.5 bits (68), Expect = 3.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 675 GRGFDWFGRCARRNLEPFFN*SSNQRIALRA 767
G+G DW G RR L P++N S R+++ A
Sbjct: 43 GKGLDWIGNVDRR-LRPYYNPSLKSRVSISA 72
>AJ406629-1|CAC10693.1| 92|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 92
Score = 31.5 bits (68), Expect = 3.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 675 GRGFDWFGRCARRNLEPFFN*SSNQRIALRA 767
G+G DW G RR L P++N S R+++ A
Sbjct: 10 GKGLDWIGNVDRR-LRPYYNPSLKSRVSISA 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,289,397
Number of Sequences: 237096
Number of extensions: 2089846
Number of successful extensions: 4309
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4291
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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