Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o05
         (799 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069495-1|AAL39640.1|  923|Drosophila melanogaster LD22235p pro...    91   1e-18
AY058705-1|AAL13934.1|  463|Drosophila melanogaster LD42783p pro...    91   1e-18
AJ556817-1|CAD89222.1| 1177|Drosophila melanogaster SMG5 protein...    91   1e-18
AE014134-2425|AAF53352.1| 1177|Drosophila melanogaster CG8954-PB...    91   1e-18
AE014134-2424|AAF53351.1| 1177|Drosophila melanogaster CG8954-PA...    91   1e-18

>AY069495-1|AAL39640.1|  923|Drosophila melanogaster LD22235p protein.
          Length = 923

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 52/133 (39%), Positives = 69/133 (51%)
 Frame = -1

Query: 799  ELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQI 620
            ELD+LK+     R  IRWLE + K G+R LRAQR N+S+PL LLK  RK     + F+QI
Sbjct: 794  ELDDLKKRSENVRHVIRWLEQEFKQGNRHLRAQRDNESQPLSLLKISRKMDRDASVFLQI 853

Query: 619  LEFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGI 440
             +FCNH VA            +V + + S V  L   N  E   Q + FS  G   S  +
Sbjct: 854  AQFCNHLVANHAD-------PHVSELQKSVVTYLSGDNLHEKNRQQQNFSYTGILDSIPV 906

Query: 439  SVENIVDFYSKWR 401
                I  FY+K++
Sbjct: 907  RYAQIQSFYAKFK 919


>AY058705-1|AAL13934.1|  463|Drosophila melanogaster LD42783p
           protein.
          Length = 463

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 52/133 (39%), Positives = 69/133 (51%)
 Frame = -1

Query: 799 ELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQI 620
           ELD+LK+     R  IRWLE + K G+R LRAQR N+S+PL LLK  RK     + F+QI
Sbjct: 334 ELDDLKKRSENVRHVIRWLEQEFKQGNRHLRAQRDNESQPLSLLKISRKMDRDASVFLQI 393

Query: 619 LEFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGI 440
            +FCNH VA            +V + + S V  L   N  E   Q + FS  G   S  +
Sbjct: 394 AQFCNHLVANHAD-------PHVSELQKSVVTYLSGDNLHEKNRQQQNFSYTGILDSIPV 446

Query: 439 SVENIVDFYSKWR 401
               I  FY+K++
Sbjct: 447 RYAQIQSFYAKFK 459


>AJ556817-1|CAD89222.1| 1177|Drosophila melanogaster SMG5 protein
            protein.
          Length = 1177

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 52/133 (39%), Positives = 69/133 (51%)
 Frame = -1

Query: 799  ELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQI 620
            ELD+LK+     R  IRWLE + K G+R LRAQR N+S+PL LLK  RK     + F+QI
Sbjct: 1048 ELDDLKKRSENVRHVIRWLEQEFKQGNRHLRAQRDNESQPLSLLKISRKMDRDASVFLQI 1107

Query: 619  LEFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGI 440
             +FCNH VA            +V + + S V  L   N  E   Q + FS  G   S  +
Sbjct: 1108 AQFCNHLVANHAD-------PHVSELQKSVVTYLSGDNLHEKNRQQQNFSYTGILDSIPV 1160

Query: 439  SVENIVDFYSKWR 401
                I  FY+K++
Sbjct: 1161 RYAQIQSFYAKFK 1173


>AE014134-2425|AAF53352.1| 1177|Drosophila melanogaster CG8954-PB,
            isoform B protein.
          Length = 1177

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 52/133 (39%), Positives = 69/133 (51%)
 Frame = -1

Query: 799  ELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQI 620
            ELD+LK+     R  IRWLE + K G+R LRAQR N+S+PL LLK  RK     + F+QI
Sbjct: 1048 ELDDLKKRSENVRHVIRWLEQEFKQGNRHLRAQRDNESQPLSLLKISRKMDRDASVFLQI 1107

Query: 619  LEFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGI 440
             +FCNH VA            +V + + S V  L   N  E   Q + FS  G   S  +
Sbjct: 1108 AQFCNHLVANHAD-------PHVSELQKSVVTYLSGDNLHEKNRQQQNFSYTGILDSIPV 1160

Query: 439  SVENIVDFYSKWR 401
                I  FY+K++
Sbjct: 1161 RYAQIQSFYAKFK 1173


>AE014134-2424|AAF53351.1| 1177|Drosophila melanogaster CG8954-PA,
            isoform A protein.
          Length = 1177

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 52/133 (39%), Positives = 69/133 (51%)
 Frame = -1

Query: 799  ELDNLKREQSTARKAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINNFIQI 620
            ELD+LK+     R  IRWLE + K G+R LRAQR N+S+PL LLK  RK     + F+QI
Sbjct: 1048 ELDDLKKRSENVRHVIRWLEQEFKQGNRHLRAQRDNESQPLSLLKISRKMDRDASVFLQI 1107

Query: 619  LEFCNHFVAEDKKTQGSGDAENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGI 440
             +FCNH VA            +V + + S V  L   N  E   Q + FS  G   S  +
Sbjct: 1108 AQFCNHLVANHAD-------PHVSELQKSVVTYLSGDNLHEKNRQQQNFSYTGILDSIPV 1160

Query: 439  SVENIVDFYSKWR 401
                I  FY+K++
Sbjct: 1161 RYAQIQSFYAKFK 1173


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,336,279
Number of Sequences: 53049
Number of extensions: 666792
Number of successful extensions: 1613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)