Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o05
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    30   2.2  
AY145133-1|AAN52916.1|  435|Caenorhabditis elegans TCL-2 protein.      29   2.9  
AC024761-7|AAF59468.3|  435|Caenorhabditis elegans T cell lineag...    29   2.9  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 342 LITMERMDFEDIDKTSKSSCEVLIGHVQNAHYTLYKKKKTNN--VFIE 205
           + T+ER   +D+DK      EVL   V NA    Y KK++ N  VF+E
Sbjct: 439 ITTVERCRNDDMDKEISGKLEVLRVKVHNAVKNFYIKKESINHGVFVE 486


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 520 LLVGNADEDEEQYKEFSVMGAAQSAGISVENIVDFYS 410
           +L+ ++DEDEE+ + F  M    S G+    +V  YS
Sbjct: 186 ILIADSDEDEEEEEFFDEMPVINSLGVRSPTLVKAYS 222


>AY145133-1|AAN52916.1|  435|Caenorhabditis elegans TCL-2 protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 758 SYPLVGTSIKKWLKISTSTTSEPVKAPAALEISP*SSSP 642
           S P+  T+ +  +KIS  +  EPV  P A+ + P    P
Sbjct: 283 SVPISRTASRNLMKISRKSVEEPVPEPQAVHVEPVIEKP 321


>AC024761-7|AAF59468.3|  435|Caenorhabditis elegans T cell lineage
           defect protein 2 protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 758 SYPLVGTSIKKWLKISTSTTSEPVKAPAALEISP*SSSP 642
           S P+  T+ +  +KIS  +  EPV  P A+ + P    P
Sbjct: 283 SVPISRTASRNLMKISRKSVEEPVPEPQAVHVEPVIEKP 321


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 306 DKTSKSSCEVLIGHVQNAHYTLYKKKKTNNVFIEGSAENFLL 181
           D     + E +IG  Q  H  +YKKKK  +   + S  N +L
Sbjct: 24  DFLRNKTAEDIIGLRQQYHRAIYKKKKEESALADASQPNLVL 65


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 553 VLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGISVENIV 422
           V+QG  +S+L   +G+  E      E S   A  SAG  + NI+
Sbjct: 127 VIQGFGASILFSSIGSISEGWSPIAEISTYIAFLSAGFQLSNII 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,650,036
Number of Sequences: 27780
Number of extensions: 362441
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)