Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o05
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 395 CLSPFAVEIYDVFYGNAGRLRC-AHN 469
           C  P   +  D++ G  G LRC AHN
Sbjct: 222 CEKPEVCDYPDIYSGYEGALRCLAHN 247


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 395 CLSPFAVEIYDVFYGNAGRLRC-AHN 469
           C  P   +  D++ G  G LRC AHN
Sbjct: 222 CEKPEVCDYPDIYSGYEGALRCLAHN 247


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 395 CLSPFAVEIYDVFYGNAGRLRC-AHN 469
           C  P   +  D++ G  G LRC AHN
Sbjct: 222 CEKPEVCDYPDIYSGYEGALRCLAHN 247


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -3

Query: 329 KEWTSRISIKRQKA--LARF**DTSKTLTIHYTKKKKLIMFSLKVARKIFY*CIVSIINF 156
           KEW  R + K  +A  +      T +T T  Y +    ++ + KV+ + F     ++   
Sbjct: 514 KEWIERGTTKSMEAANIMSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLS-- 571

Query: 155 YISV*HYITIHKFIIHNVFI*HTIGKI 75
           +  + H   ++K  IHN +  HT G++
Sbjct: 572 FCEMIHNAQVNKRSIHNNYPVHTFGRL 598


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 502 DEDEEQYKEFSVMGAAQSAGISVEN 428
           DEDEE+ +E  V+G    AG+   N
Sbjct: 357 DEDEEEEEEVVVVG-RNGAGVGAMN 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,600
Number of Sequences: 438
Number of extensions: 5480
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)