Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o04
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.1  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    26   2.0  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   4.5  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    24   6.0  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    24   6.0  

>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 140 DLLAQYPDITKPASFKEVSSHNVLHYIETTGPPVHARAR 256
           DL  +YPD  +  S  E++   V+H I+ T   +H + +
Sbjct: 95  DLKQKYPDAAEYISKIEINGGKVMHEIDATKLHLHKKLK 133


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 152 QYPDITKPASFKEVSSHNVLHYIETTGPPVHARARPLAPIFR 277
           Q P   K  +  +++ H   HY +++GP     ++P++P F+
Sbjct: 8   QCPVCAKTVTMNDINPHLDSHYSDSSGP-----SKPVSPFFK 44


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 197 SHNVLHYIETTGPPVHARARPLAPIF 274
           SHN  H IE     ++   RPL  +F
Sbjct: 273 SHNYQHLIENESADINIAHRPLTTLF 298


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 229 SSFNIMQNVMRTYFLK*RWFRNVGVLR*QITIW 131
           + F +M  +++ Y    RWF N+  +   ITIW
Sbjct: 45  TDFKLMYVIVKFY----RWFNNLSFITRWITIW 73


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 131 PYRDLLAQYPDITKPASFKEV 193
           P+RD L  YP  + P +FK V
Sbjct: 64  PFRDSLNSYPLPSAPPNFKSV 84


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 188 P*MTLVS*CRGTALTNHDMDDSHQQYAMKVDC*QQYKLIHSDLL 57
           P +TL     G    NH +  +H  Y M  +   +Y++ ++D+L
Sbjct: 174 PNVTLTIKKNGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADIL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,796
Number of Sequences: 5004
Number of extensions: 23005
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)