Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o04
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878...    29   1.4  
05_05_0251 + 23616546-23617760                                         28   1.8  
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893...    26   9.6  
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469...    26   9.6  
01_04_0074 + 15760667-15761815                                         26   9.6  

>05_03_0131 +
           8779006-8779073,8779517-8779662,8779739-8780794,
           8781070-8781232,8781423-8781494,8782076-8782147,
           8782643-8782815,8782958-8783163,8783277-8783403,
           8783793-8783864,8783984-8784176,8784298-8784768,
           8785635-8785740
          Length = 974

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 50  DKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDI 166
           D  T+L  +A +  +N   +HTVDV +  RDL  +Y  +
Sbjct: 88  DFKTNLTYVADVGFTNTGFIHTVDVGNLQRDLAQRYTTV 126


>05_05_0251 + 23616546-23617760
          Length = 404

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 110 HTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLHYIETTGPPVH 244
           H + + +PY         ++ P   ++  +  + HY + TGP VH
Sbjct: 118 HRLRIPYPYVSWATVAATLSSPPENEDCLAAAICHYCQETGPRVH 162


>04_03_0620 -
           18088287-18088495,18089174-18089210,18089315-18089395,
           18089771-18089838,18093361-18094219
          Length = 417

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 240 TGGPVVSI*CKTL*ELTSLNDAGFVMSGYCANKSRYG*LTS 118
           TG     I C+TL  +   ++ G +MSG C +  R G +TS
Sbjct: 112 TGNKFTVIGCRTLAYIADKDNVGKLMSG-CVSACRRGDVTS 151


>02_05_0425 -
           28845707-28846189,28846262-28846403,28846496-28846971,
           28848817-28848848,28849429-28849572,28849770-28849841,
           28850281-28850296
          Length = 454

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = +2

Query: 101 PSLHTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLHYIETTGPPVHARARP 259
           PSL T       R  LA YP I   + F    +     Y+ TT     ARA P
Sbjct: 110 PSLRTSRFHRSSR--LAAYPGIIDESGFTSDGAGEAYTYMRTTTASAGARAAP 160


>01_04_0074 + 15760667-15761815
          Length = 382

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 252 LDHWHPFFVDLHLKHNLLSFNTENNTTTLH 341
           L H  PF VD    + +LSF+ E     LH
Sbjct: 306 LVHGDPFSVDWSADYGMLSFDLEREIVFLH 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,062,451
Number of Sequences: 37544
Number of extensions: 136711
Number of successful extensions: 312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)