Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o04
         (352 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB177850-1|BAD66828.1| 1217|Homo sapiens KIAA0596 splice variant...    29   5.5  
X05615-1|CAA29104.1| 2767|Homo sapiens thyroglobulin protein.          28   7.2  
U93033-1|AAC51924.1| 2768|Homo sapiens thyroglobulin protein.          28   7.2  
AF105687-1|AAC95473.1|  421|Homo sapiens thyroglobulin protein.        28   7.2  
AB209159-1|BAD92396.1| 1574|Homo sapiens Thyroglobulin precursor...    28   7.2  

>AB177850-1|BAD66828.1| 1217|Homo sapiens KIAA0596 splice variant 1
           protein.
          Length = 1217

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 5   TSNNLLVDMGERKLIDKVTDLNVLACIVVSNQPSL 109
           TS+ LL +  +R+L+DK  +L V   +  SNQ  L
Sbjct: 80  TSSGLLCEFSDRRLLDKWVELRVYPEVKDSNQACL 114


>X05615-1|CAA29104.1| 2767|Homo sapiens thyroglobulin protein.
          Length = 2767

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 11   NNLLVDMG---ERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPAS 181
            NN  V +G     +L   VT  + L  I V++ P LH ++ +   +DLL ++ D+ +  S
Sbjct: 1347 NNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGS 1406

Query: 182  FK 187
            F+
Sbjct: 1407 FQ 1408


>U93033-1|AAC51924.1| 2768|Homo sapiens thyroglobulin protein.
          Length = 2768

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 11   NNLLVDMG---ERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPAS 181
            NN  V +G     +L   VT  + L  I V++ P LH ++ +   +DLL ++ D+ +  S
Sbjct: 1348 NNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGS 1407

Query: 182  FK 187
            F+
Sbjct: 1408 FQ 1409


>AF105687-1|AAC95473.1|  421|Homo sapiens thyroglobulin protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 11  NNLLVDMG---ERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPAS 181
           NN  V +G     +L   VT  + L  I V++ P LH ++ +   +DLL ++ D+ +  S
Sbjct: 203 NNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGS 262

Query: 182 FK 187
           F+
Sbjct: 263 FQ 264


>AB209159-1|BAD92396.1| 1574|Homo sapiens Thyroglobulin precursor
           variant protein.
          Length = 1574

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 11  NNLLVDMG---ERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPAS 181
           NN  V +G     +L   VT  + L  I V++ P LH ++ +   +DLL ++ D+ +  S
Sbjct: 154 NNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGS 213

Query: 182 FK 187
           F+
Sbjct: 214 FQ 215


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,200,235
Number of Sequences: 237096
Number of extensions: 809472
Number of successful extensions: 1302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)