Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o04
         (352 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119104-1|AAM50964.1| 1151|Drosophila melanogaster RE07981p pro...    27   5.1  
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi...    27   5.1  
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA...    27   5.1  
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran...    27   8.9  

>AY119104-1|AAM50964.1| 1151|Drosophila melanogaster RE07981p
           protein.
          Length = 1151

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 8   SNNLLVDMGERKLIDKVTDLNVLACIVVS 94
           +NN++++ G    IDK+T +  + C+V S
Sbjct: 669 NNNIMINGGTNSSIDKMTAIEEIDCVVES 697


>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
           ubiquitin-conjugatingenzyme protein.
          Length = 4876

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 8   SNNLLVDMGERKLIDKVTDLNVLACIVVS 94
           +NN++++ G    IDK+T +  + C+V S
Sbjct: 669 NNNIMINGGTNSSIDKMTAIEEIDCVVES 697


>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
           protein.
          Length = 4876

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 8   SNNLLVDMGERKLIDKVTDLNVLACIVVS 94
           +NN++++ G    IDK+T +  + C+V S
Sbjct: 669 NNNIMINGGTNSSIDKMTAIEEIDCVVES 697


>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1088

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 140 DLLAQYPDITKPASFKEVSSHNVLHYIETTGPPVHA 247
           D + QYPD TKP +    +S+  +  + + G PVH+
Sbjct: 492 DPILQYPDFTKPFTLTTDASNFAIGAVLSQG-PVHS 526


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,380
Number of Sequences: 53049
Number of extensions: 248695
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 838265760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)