Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o04
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   9.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    20   9.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 68  NVLACIVVSNQPSLHT 115
           N++ CIV+   PS+ T
Sbjct: 51  NIITCIVIWRNPSMQT 66


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 68  NVLACIVVSNQPSLHT 115
           NV  C+V++   S+HT
Sbjct: 71  NVSTCVVIARNKSMHT 86


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 HNVLHYIETTGPPVHARARP 259
           H  LH+ ++T P   A+A+P
Sbjct: 811 HQQLHHHQSTHPQAQAQAQP 830


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 274 KNGCQWSSTSMHRWTSSFNIMQNVM 200
           K GC   + +  RW S+F I   V+
Sbjct: 498 KRGCYQLAINHIRWNSAFAIAPAVI 522


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 274 KNGCQWSSTSMHRWTSSFNIMQNVM 200
           K GC   + +  RW S+F I   V+
Sbjct: 588 KRGCYQLAINHIRWNSAFAIAPAVI 612


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 265 CQWSSTSMHR 236
           C W+ TS HR
Sbjct: 70  CTWTITSYHR 79


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 150 RSTPTLRNQRHLRK*VLITFCIILKLLVHRCMLVLDHWHPFFVDLH 287
           + T  L   + L+K ++I    +   +V + +L L    PF V LH
Sbjct: 6   KGTDELYAIKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLH 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,941
Number of Sequences: 438
Number of extensions: 1504
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)