Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o02
(271 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 34 0.016
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 31 0.085
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 31 0.15
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 30 0.20
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 29 0.34
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 29 0.34
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 0.34
Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical p... 29 0.60
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 0.60
AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical... 29 0.60
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 28 0.79
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 28 1.0
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 1.0
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 27 1.8
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 27 2.4
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 26 3.2
U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical p... 26 3.2
U39653-4|AAL56624.1| 649|Caenorhabditis elegans Prion-like-(q/n... 26 3.2
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z50794-6|CAA90659.2| 388|Caenorhabditis elegans Hypothetical pr... 26 4.2
U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in b... 26 4.2
U70845-1|AAB09098.1| 79|Caenorhabditis elegans Hypothetical pr... 26 4.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 26 4.2
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 26 4.2
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 26 4.2
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 26 4.2
AC006676-3|AAK71381.3| 157|Caenorhabditis elegans Hypothetical ... 26 4.2
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 25 5.6
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 25 5.6
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 25 7.3
AF039046-14|AAB94214.1| 388|Caenorhabditis elegans Prion-like-(... 25 7.3
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 25 7.3
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 25 7.3
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 25 7.3
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 25 7.3
Z73972-9|CAB60280.2| 353|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z71177-10|CAB60279.2| 353|Caenorhabditis elegans Hypothetical p... 25 9.7
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z35604-3|CAA84679.1| 352|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z29560-6|CAA82658.1| 156|Caenorhabditis elegans Hypothetical pr... 25 9.7
AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 33.9 bits (74), Expect = 0.016
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 197 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 84
C P C P C+P C PL Q+ VP +C P PC
Sbjct: 372 CVPSCMPA-CQPSCTNPVPLTTQAPVPVVNQCIP--PC 406
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 31.5 bits (68), Expect = 0.085
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = -3
Query: 194 PPVCSPPDCRPI-------CGPASPLLCQSSVPPTQRCYPVNPCINIYSC 66
P C+ P+CRP+ CG PL ++ + T C P++ C Y C
Sbjct: 1255 PVKCTTPECRPVAKCIPNMCGTGEPLALENHLLAT--CSPISSCPAGYHC 1302
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 30.7 bits (66), Expect = 0.15
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -3
Query: 200 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 96
Y P +P C+P C PA C P +C P
Sbjct: 119 YTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVP 153
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 30.3 bits (65), Expect = 0.20
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -3
Query: 200 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 96
Y P +P C+P C PA C P +C P
Sbjct: 119 YTPTTPAPVQCQPSCMPACEQSCVVQTPAPVQCVP 153
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 29.5 bits (63), Expect = 0.34
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 182 SPPDCRPICGPASPLLCQSSVPPTQRCYP 96
+P C+P C PA C + P T +C P
Sbjct: 124 APVQCQPSCMPACEQSCVAPAPVTVQCVP 152
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 29.5 bits (63), Expect = 0.34
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 182 SPPDCRPICGPASPLLCQSSVPPTQRCYP 96
+P C+P C PA C + P T +C P
Sbjct: 125 APVQCQPSCMPACEQSCVAPAPVTVQCVP 153
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 185 CSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 84
C PP+ +P C C +SVPP R P PC
Sbjct: 200 CCPPE-QPCCPELKLDNCLASVPPCLRACPSCPC 232
>Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 200 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCY-PVNPCINIYSC 66
+C P+ PDC + P++ C + T Y V+ CI ++C
Sbjct: 292 FCLPMVYNPDCYGVDNPSNTDWCYTEAEVTVNYYRDVDTCIAAFTC 337
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -3
Query: 191 PVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 66
PVC PP P P +C PP C P P + SC
Sbjct: 52 PVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSC 93
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 194 PPVCSPPDCRPI-CGPASPLLCQSSVP 117
PP+C PP P+ C P P + + S P
Sbjct: 68 PPICPPPPPPPMPCPPPPPPMPRPSCP 94
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -3
Query: 197 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCI 81
CP PP PIC P P PP P PC+
Sbjct: 60 CPAQFCPPP--PICPPPPPPPMPCPPPPPPMPRPSCPCM 96
>AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 200 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCY-PVNPCINIYSC 66
+C P+ PDC + P++ C + T Y V+ CI ++C
Sbjct: 292 FCLPMVYNPDCYGVDNPSNTDWCYTEAEVTVNYYRDVDTCIAAFTC 337
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 28.3 bits (60), Expect = 0.79
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 191 PVCSPPDCRPICGPASPLLCQSSVP 117
P C PP P C P++P++ P
Sbjct: 121 PACPPPCFGPACAPSAPIIVNGPPP 145
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 191 PVCSPPDCRPICGPASPLLCQSSVP 117
P C PP P C P +P++ P
Sbjct: 93 PACPPPCFGPACAPPAPIIVNGPPP 117
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 191 PVCSPPDCRPICGPASPLLCQSSVP 117
P C PP P C P +P++ P
Sbjct: 65 PACPPPCFGPACVPLAPIIVNGPPP 89
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 197 CPPVCSPPDCRPICGPASPLL 135
CPP C P C P P +P+L
Sbjct: 151 CPPPCFGPACAP--PPPAPIL 169
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Frame = -3
Query: 197 CPPVCSPPDCRPICGPASPLLC----QSSV---PPTQRC 102
CP +CS +C P C P C Q SV PP RC
Sbjct: 224 CPSICSQANCIPQCMPRCLPTCIQQIQISVPLPPPAPRC 262
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Frame = -3
Query: 206 MGYCPPVC-----SPPDCRPICGPASPLLCQSSVPPT--QRCYPV 93
M C P C P +C P C P+ C V P+ Q+C PV
Sbjct: 112 MPLCLPACINAIQGPTECAPQCMPSCSSNCIQQVFPSCPQQCQPV 156
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 170 CRPICGPASPLLCQSSVPPTQRCYP 96
C P C P+ C S+ P Q+CYP
Sbjct: 306 CLPACMPSCTSSCVQSMCP-QQCYP 329
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 194 PPVCSPPDCRPICGPASPLLC-QSSVPPTQRCYPVNPC 84
PP C PP P+C P PL C + P Q C P C
Sbjct: 27 PPPCPPPP-PPMCAP-PPLPCPPPPICPPQFCPPPPMC 62
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 200 YCPPVCSPPDCRPICGPASPLLCQSSVPP 114
+CPP PP C P P P +C PP
Sbjct: 55 FCPP---PPMCPPPPPPPPPPMCPPPPPP 80
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -3
Query: 197 CPPVCSPPDCRP-ICGPASPLLCQSSVPPTQRCYPVNPCINIYS 69
CPP PP C P C P PP C P P + YS
Sbjct: 45 CPP---PPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYS 85
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -3
Query: 197 CPPVCSP--PDCRPICGPA-SPLLCQSSVPPTQRCYPVNPCINI 75
CPP +P P C P P SPL+C P P NPC I
Sbjct: 110 CPPPPAPAAPCCPPPPPPTPSPLVCCKQAP-----VPENPCCQI 148
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 194 PPVCSPPDCRPI---CGPASPLLCQSSVPPTQRCYPVNP 87
P VCS P RP+ CG A P+ C + P RC + P
Sbjct: 182 PCVCSAP--RPVPCRCG-APPMECPNCDMPAPRCSMMAP 217
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -3
Query: 197 CPPVC-SPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 87
C P C P C P+C P P C + PP C V P
Sbjct: 48 CAPACPQAPSC-PVCPPPQP--CPA--PPAAYCPQVQP 80
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 197 CPPVCSPPDCRPICGPASPLLCQSSVPPTQR 105
C P C P + C PA +C SS Q+
Sbjct: 178 CMPACLPSCVQSSCAPACQPMCSSSCVQQQQ 208
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -3
Query: 197 CPPVCSPPDCRPICGPASPLLCQSSVPPTQR 105
C P C P + C PA +C S Q+
Sbjct: 225 CMPSCQPSCVQQACAPACQPMCSSQCVEQQQ 255
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Frame = -3
Query: 206 MGYCPPVCSPPD--CRPICGPASPLLCQSSVPPTQRCYP 96
M C P C C C P+ C S+ Q C P
Sbjct: 323 MPQCTPQCVQQQTICAAACQPSCQSSCSSNAQCVQACLP 361
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 153 TCISAPLPEQRATNTTVLSCKSLHQHIQLLHSNY 52
TC S P P R+ N+T S S+ +HI H NY
Sbjct: 339 TCTS-PSPHPRSANSTSSSSMSVIEHIMRRH-NY 370
>U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical
protein C43E11.11 protein.
Length = 656
Score = 26.2 bits (55), Expect = 3.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 166 VRSVDLHLRSFARAACHQH 110
+ +D+H+ +RA CH H
Sbjct: 483 INHIDMHMAHVSRAVCHSH 501
>U39653-4|AAL56624.1| 649|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform b protein.
Length = 649
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 12 PFLNSL*KSSIALHNLSVTAVYVDARIYRI 101
PFLN L SS+ LH L ++V R+
Sbjct: 351 PFLNKLHTSSVPLHRLPRQTIFVQNSTVRL 380
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 185 CSPPDCRPICGPASPLLCQSSVP 117
C PP P+C P P C +P
Sbjct: 241 CLPPPPSPVCMPPPPPPCPMPIP 263
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 170 CRPICGPASPLLCQSSVPPTQRCYP 96
C P C PA C +V T+ C P
Sbjct: 298 CIPACQPACTPQCVQAVTTTETCIP 322
>Z50794-6|CAA90659.2| 388|Caenorhabditis elegans Hypothetical
protein F59F5.5 protein.
Length = 388
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -3
Query: 170 CRPICGPASPLLCQSSVPPTQRCYPVNPC 84
C+ + G P+ C PP ++C N C
Sbjct: 16 CKTVNGKVDPVNCDCKSPPNEQC-SANAC 43
>U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 11 protein.
Length = 395
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 197 CPPVCSPPDCRPICGPASP 141
C P C C+P C PA+P
Sbjct: 317 CAPQCDA-QCQPACSPAAP 334
>U70845-1|AAB09098.1| 79|Caenorhabditis elegans Hypothetical
protein F22H10.3 protein.
Length = 79
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 206 MGYCPPVCSPPDCRPICGPASPLL 135
MGY PP+ P P+ P +P++
Sbjct: 23 MGYAPPIAPIPMVAPMPVPVAPMM 46
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 194 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 87
PP SPP RP P SP PP+ P NP
Sbjct: 150 PPPRSPPPRRPPMTPPSPQRRPPRTPPSPE--PRNP 183
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 200 YCPPVCSPPDCRPICGPASPLLCQSSVP 117
Y P +P C+P C PA C + P
Sbjct: 119 YTPVAPAPVQCQPSCMPACEQSCVAPAP 146
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 200 YCPPVCSPPDCRPICGPASPLLCQSSVP 117
Y P +P C+P C PA C + P
Sbjct: 119 YTPVAPAPVQCQPSCMPACEQSCVAPAP 146
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Frame = -3
Query: 197 CP---PVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCIN 78
CP PVC+ P C P P P +P Y PC N
Sbjct: 29 CPEPMPVCATPPCPPQYAPLPP----PPMPAPAPAYNPYPCAN 67
>AC006676-3|AAK71381.3| 157|Caenorhabditis elegans Hypothetical
protein M04F3.2 protein.
Length = 157
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 88 GFTG*HRCVGGTLLWQRSGDAGPQIGRQSGGEQTGGQ 198
GF G GG ++RS D G GR GG GGQ
Sbjct: 121 GFRGRREARGG---FRRSDDRGGFRGRDGGGGFRGGQ 154
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -3
Query: 176 PDCRPICGPASPLLCQSSVPPTQRCYPVN 90
P CRP C P+ + C P RC N
Sbjct: 309 PSCRPDCMPSCHVDCLIIPPQQVRCNSFN 337
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 194 PPVCSPPDCRPICGPASP 141
PP C+PP P CG +P
Sbjct: 37 PPACAPPPA-PACGGGAP 53
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = -3
Query: 203 GYCPPVCSPPDCRPICGPASPLLCQS-SVPPTQRCYPVNPCINIYSCY 63
G C V S PDC P C + S PT+ C V + CY
Sbjct: 32 GGCGMVASCPDCEPGPECLEKNDCNTKSCAPTEECVLVQVTCIMAPCY 79
>AF039046-14|AAB94214.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 54
protein.
Length = 388
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Frame = -3
Query: 200 YCPPVCSPP----DCRPICGPASPLLCQSSVPPTQRCYP 96
Y PP + P C+P+C C P +C P
Sbjct: 118 YNPPATTTPAPVVQCQPMCQQQCQSTCVQQQQPASQCQP 156
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 12/32 (37%)
Frame = -3
Query: 191 PVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 96
PV C+P+C C P +C P
Sbjct: 130 PVVQYQQCQPVCQQQCQSTCVQQQQPAAQCQP 161
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -3
Query: 170 CRPICGPASPLLCQSSVPPTQRCYPVNPCIN 78
C P C +CQ + TQ+ Y N +N
Sbjct: 219 CEPACNTQCSDICQQTAQATQQVYNNNQNMN 249
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 12/32 (37%)
Frame = -3
Query: 191 PVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 96
PV C+P+C C P +C P
Sbjct: 130 PVVQYQQCQPVCQQQCQSTCVQQQQPAAQCQP 161
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 12/32 (37%)
Frame = -3
Query: 191 PVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 96
PV C+P+C C P +C P
Sbjct: 130 PVVQYQQCQPVCQQQCQSTCVQQQQPAAQCQP 161
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 12/32 (37%)
Frame = -3
Query: 191 PVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 96
PV C+P+C C P +C P
Sbjct: 130 PVVQYQQCQPVCQQQCQSTCVQQQQPAAQCQP 161
>Z73972-9|CAB60280.2| 353|Caenorhabditis elegans Hypothetical
protein F15H10.8 protein.
Length = 353
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 205 IFYFFNL*TCKFKKLYEY 258
+F+ FN+ T KFK+ Y Y
Sbjct: 6 LFHDFNVRTSKFKEFYRY 23
>Z71177-10|CAB60279.2| 353|Caenorhabditis elegans Hypothetical
protein F15H10.8 protein.
Length = 353
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 205 IFYFFNL*TCKFKKLYEY 258
+F+ FN+ T KFK+ Y Y
Sbjct: 6 LFHDFNVRTSKFKEFYRY 23
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
ZK287.4 protein.
Length = 1208
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = -3
Query: 209 KMGYCPP--VCSPPDCRPICGPASPLLCQSSVPPTQRC 102
K CP VC+P C P+ C S PP C
Sbjct: 1091 KAAKCPGDHVCTPRGNEAYCCPSPMNFCLQSRPPISVC 1128
>Z35604-3|CAA84679.1| 352|Caenorhabditis elegans Hypothetical
protein ZK1058.3 protein.
Length = 352
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 105 VLSCKSLHQHIQLLHSNYV 49
V+ C ++H H QL SNY+
Sbjct: 158 VVGCSNMHPHGQLWASNYL 176
>Z29560-6|CAA82658.1| 156|Caenorhabditis elegans Hypothetical
protein K03H1.6 protein.
Length = 156
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 92 LQDSTVVLVARCSGK---GAEMQVHRSDDNPEVNRLVDNNPFFTF 217
LQ V C GK G + + SD+N E ++D+N F +
Sbjct: 23 LQSVAVSGQLNCLGKPAVGVRIDLMESDNNGEETGIIDDNDFMGY 67
>AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical
protein VW02B12L.3 protein.
Length = 299
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 194 PPVCSPPDCRPICGPASPLLCQSSVPPTQR 105
P +PP RP + ++SVPPT R
Sbjct: 154 PVAAAPPKPRPAAPAVAAPAVKASVPPTVR 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,169,053
Number of Sequences: 27780
Number of extensions: 126460
Number of successful extensions: 603
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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