Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o01
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 29 0.91
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 28 1.2
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.1
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 2.1
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 3.7
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 4.9
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 4.9
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 4.9
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 8.5
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -2
Query: 454 SETFIKTNPMCDLNCIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDNA 275
S++ I P + +Y F++ + ++L F +P DG R N+ V A
Sbjct: 638 SDSVISAVPPAEYASRFYKFVESSIKPTL--LVLKPFPLKPQDGQRVNKQQSVNAGNVRT 695
Query: 274 LNKY 263
NK+
Sbjct: 696 NNKH 699
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 28.3 bits (60), Expect = 1.2
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = -2
Query: 457 SSETFIKTNPMCDLNCIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDN 278
SS T + N + D++ ++ EK R LLS+F K+ + N++ DV+ E +
Sbjct: 370 SSPTVSRANSVIDVD----AYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLD 425
Query: 277 ALNKYKTRLEAIKKILREKRAKMKTLESEGKP 182
N+ L KK+ E K + SE P
Sbjct: 426 NNNESDIGLTVKKKV--ENGNAWKQIFSERAP 455
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 62 VIVWNIYFINVNDCINVI--IRLGYLVFLRELNPSY 163
V++ YF+N VI IR GYL+ R NPSY
Sbjct: 163 VLLAACYFMNTTPSRLVINLIRSGYLILKRFANPSY 198
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -2
Query: 403 YSFIKEKFRIAFNGILLSYFTKRPNDGNRGNE-SVDVTAEKDNALNKYKTRL 251
Y+ ++ + R+ + +L ++ + PN + S VTA+ +NAL KYK+ +
Sbjct: 90 YTVVEPRLRLKLDQLLATWKQRPPNSSSLEPVFSPIVTAKIENALLKYKSTI 141
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 322 NRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTL 200
N N + + K +NK K + E +KK ++E A KT+
Sbjct: 61 NIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTV 101
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 622 KMALKTGLMEITSNIYKTKMIGAFKRNEDILS-RNFYKDI 506
+ L G++E+T+ + ++I KRN D L R F+K++
Sbjct: 441 RKCLLQGVIELTNLGHNLELINFIKRNGDPLEWRKFFKNV 480
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 571 TKMIGAFKRNEDILSRNFYKDINIEQHQNYLLKEETEK 458
+++IG RNE + +Y D++ + Q ++L+ K
Sbjct: 43 SRIIGQLWRNESAQVKKYYSDLSALERQKHMLENPEYK 80
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 4.9
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = -2
Query: 586 SNIYKT--KMIGAFKRNEDILSRNFYKDINIEQHQNYLLKEETEKSSETFIKTNPMCDLN 413
+N+ K K++G+ R+ D+ N Y ++Q N LK + + E ++ + M DL
Sbjct: 184 ANVLKAGKKLLGSASRDYDVNPAN-YSTHYLQQLSN--LKSRLDLAGE-YLDDSIMNDLG 239
Query: 412 CIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKI 233
S K + S +P D +E+V ++A + NAL + +++ +K+
Sbjct: 240 DNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSENVHLSARQRNALKRKARQMKNSQKV 299
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = -2
Query: 355 LSYFTKRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESEGKPNK 176
+ YF +R + +S T++ ++++NK + ++E K+ E+ K K SE P +
Sbjct: 65 VEYFRQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKEDNVEQEIKQKRSLSE-SPQE 123
Query: 175 S 173
S
Sbjct: 124 S 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,906
Number of Sequences: 5004
Number of extensions: 55714
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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