Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o01
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   9.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   9.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 568 KMIGAFKRNEDILSRNFYKDINIEQHQNYLLKEETEKSSETFIKTNPM 425
           K +G+  RN+ +L      ++N EQ  N   +   +K  +T   T P+
Sbjct: 757 KNVGSMSRNKALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPV 804


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 122 LGYLVFLRELNPSYAKSRLIRFAFRFE 202
           L Y +  ++L P Y++S L     +FE
Sbjct: 428 LSYFLRYKKLQPQYSQSELQMPGVKFE 454


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 122 LGYLVFLRELNPSYAKSRLIRFAFRFE 202
           L Y +  ++L P Y++S L     +FE
Sbjct: 428 LSYFLRYKKLQPQYSQSELQMPGVKFE 454


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 388 EKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAE 287
           EK +   N ++    TKRP D  R +   D T E
Sbjct: 77  EKQKHTANKVVNYLKTKRPKDWERLSAKYDSTGE 110


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 737 DQNAMKCSKEKFGNVKKRKQSQPIF 663
           D + ++C+      VKK   + PIF
Sbjct: 47  DMSVLECADRSAPRVKKTASAGPIF 71


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 388 EKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAE 287
           EK +   N ++    TKRP D  R +   D T E
Sbjct: 77  EKQKHTANKVVNYLKTKRPKDWERLSAKYDSTGE 110


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 737 DQNAMKCSKEKFGNVKKRKQSQPIF 663
           D + ++C+      VKK   + PIF
Sbjct: 137 DMSVLECADRSAPRVKKTASAGPIF 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,881
Number of Sequences: 438
Number of extensions: 3791
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)