Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n24
         (273 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570     29   0.38 
01_06_1525 + 37988037-37988237,37988315-37988410,37988508-379886...    26   4.7  

>04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570
          Length = 440

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  PNLTYLRAARCKW*CTESRGRSMGRSKNR 126
           PNL +LR  RCK+  T  R R   RSK +
Sbjct: 371 PNLEHLRLHRCKFLGTPKRKRGNSRSKGK 399


>01_06_1525 +
           37988037-37988237,37988315-37988410,37988508-37988620,
           37988739-37988805,37988891-37988983,37989095-37989238,
           37989681-37989769,37989912-37990017,37990224-37990311,
           37990395-37990513,37990786-37990950,37991222-37991406,
           37991568-37991668,37991960-37992069,37992287-37992394,
           37992596-37992706,37992791-37993002,37993087-37993423,
           37993593-37993619,37993767-37993877
          Length = 860

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 81  SPFTXCCTKIC*IRKTYSXGGCRR 10
           SP +  CT  C  R T+S   CRR
Sbjct: 671 SPVSDRCTSSCDYRGTFSPNKCRR 694


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,723,841
Number of Sequences: 37544
Number of extensions: 52081
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)