Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n22
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   3.2  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   3.2  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   5.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   7.3  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   7.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   9.7  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    24   9.7  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 157 FYSEFKNVLQVSFPETDGFSFQDIVF 80
           F +  K  L  +FP +D    +DI+F
Sbjct: 72  FQNNLKKQLSAAFPSSDTMQLEDIIF 97


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLC 236
           KT+ NSL  S+I +    +  V V+ RI R   LC
Sbjct: 407 KTYRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLC 441


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 206 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 325
           CK  Q+S   +V+   G+GA+M      D+ ++ + +  N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 32  NRQFQFCYPTSRVRCNENNILKR 100
           N  ++FC   SR   ++N +LKR
Sbjct: 776 NEIYEFCGTHSRAEVHKNEVLKR 798


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 216 KSLHQHIQLLHSNYVTQW 163
           +S H +I  L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 39   NFSFAIQLLEYVVMKTIS*KENPSV-SGKETCKTFLNSL 152
            NF+ +I LLE  ++K++   + P V   K+ C T   S+
Sbjct: 3614 NFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSI 3652


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 228  VLSCKSLHQHIQLLHSNYVTQWTISIVNLKMSYKFLFPKQMGFLFKILF 82
            +LSC   +Q I+++  + V + T  I+   MS  F+F +   FLF + +
Sbjct: 991  LLSCL-FNQLIEVVTEDQVDESTKGILYEIMSTLFVFSRAFPFLFDLSY 1038


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 322 IVHQS-VHLRIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLK 179
           I+H S VH+  +  S D+  + ++ +A H H   +    AST      K
Sbjct: 63  IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFK 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,497
Number of Sequences: 5004
Number of extensions: 32171
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)