Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10n22
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.020
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 1.3
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 29 1.3
08_02_1521 + 27650357-27651064 28 2.3
02_04_0413 + 22681957-22682035,22682253-22682788 28 3.1
01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553 28 3.1
12_02_0046 + 12830974-12832386 27 4.1
08_02_1532 + 27675824-27676531 27 4.1
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 27 4.1
04_03_1017 + 21747044-21748051 27 4.1
11_06_0610 - 25449085-25453284 27 5.4
03_01_0515 - 3864796-3865425 27 5.4
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 27 7.1
08_01_0084 - 613255-613989 27 7.1
08_01_0082 - 588269-588434,590800-591653 27 7.1
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 7.1
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 7.1
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 26 9.4
08_02_1526 + 27662697-27663401 26 9.4
08_02_1520 + 27648697-27649404 26 9.4
08_02_1519 + 27646256-27646960 26 9.4
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.1 bits (77), Expect = 0.020
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -2
Query: 326 GYCPPVCSPPDCRPICGPASPLLCQSSVPP 237
G CPP C PP C C P PL C PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 268 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 146
+RSF C+ N ++ ++L CN M+D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 305 SPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 189
S PDC CG SP C + V + +C PC +Y C
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRC 124
>08_02_1521 + 27650357-27651064
Length = 235
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -3
Query: 184 LKLCNAMDDFYSEFKNV---LQVSFPETDGFSFQ 92
L LCNAM++ ++E K + LQVS + DG Q
Sbjct: 84 LDLCNAMNEVFTELKAIIQDLQVSLRKGDGAVLQ 117
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 332 KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRC-YPVNPCINIYSC 189
K G C CS +C P P SP CQ PPT C +P PC C
Sbjct: 143 KPGCCCCGCSGGECPP---PPSPP-CQHECPPTPPCEHP--PCSESGCC 185
>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
Length = 362
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 219 CKSLHQHIQLLHSNYVTQWTISIVNLKMSYKFLFPKQMGFLFKILFSLQRTLEVG 55
CK++H H LLH + +NL + +F+ + + ++ L QR LE+G
Sbjct: 139 CKAVHPHCYLLH--------VKSINLTSATRFMSREYLELVWTKLSLQQRVLELG 185
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = -2
Query: 317 PPVCSPPDCRPICGP--ASPLLCQSSV---PPTQRCYPVNP 210
PPV SPP + I GP ASP QS V P C P P
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCVAASAPPPWCVPPPP 319
>08_02_1532 + 27675824-27676531
Length = 235
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 184 LKLCNAMDDFYSEFKNVLQ 128
L LCNAM++ ++E K+++Q
Sbjct: 84 LDLCNAMNEVFTELKSIIQ 102
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 368 FLNLQVYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 219
F+N Q + K GY + P + R P SP+ + + P T++C+P
Sbjct: 807 FVNSQFFSALSRKEGYIHNL--PTEGRRNLVPRSPMTIEEAFPFTRQCWP 854
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 317 PPVCSPPDCRPICGPASPLLCQS---SVPPTQRCYP 219
PP + PD P P+SPL + +VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 317 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 210
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 317 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 210
PP+ SPP P+ P P+ +S PP P P
Sbjct: 1163 PPIKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1196
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 317 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYS 192
PP SPP P P SP+ +SS PP PV +N Y+
Sbjct: 94 PPAASPPPPPPSPPPPSPV--KSSPPPPPAWSPVTN-VNDYT 132
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 190 VTLKLCNAMDDFYSEFKNVLQVSFPETDGFSF 95
V+ C DDFY ++ ++SF +D F +
Sbjct: 277 VSCDTCKVSDDFYHVSRDTREISFQVSDDFYY 308
>08_01_0084 - 613255-613989
Length = 244
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 221 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDN 322
D TV + RC+G+GAE VH + V+ +V +
Sbjct: 102 DGTVTVALRCTGEGAEF-VHAAAPGVAVSDVVSS 134
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 221 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDN 322
D TV + RC+G+GAE VH + V+ +V +
Sbjct: 104 DGTVTVALRCTGEGAEF-VHAAAPGVAVSDVVSS 136
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 257 CQSSVPPTQRCYPVNP 210
C SS+PPTQ Y NP
Sbjct: 453 CDSSLPPTQSLYKGNP 468
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 320 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 219
CPP P P G +P++ VPP C+P
Sbjct: 351 CPPSWPPQLMVPAPGICTPVVPIPLVPPLWSCFP 384
>11_06_0562 + 25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 26.2 bits (55), Expect = 9.4
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = -1
Query: 270 ISAPLPEQRATNT-TVLSC----KSLHQH-IQLLHSNYVTQWTISIVNLKMSYKFLFPKQ 109
I APL +Q ++T T+ SC +S+++H L W +S NLK Y+ + K+
Sbjct: 1042 ILAPLRDQGNSDTCTMHSCLGAMESMYKHQYACLEPPQDFSWILSTDNLKEEYENVVAKE 1101
Query: 108 MG 103
+G
Sbjct: 1102 IG 1103
>08_02_1526 + 27662697-27663401
Length = 234
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 184 LKLCNAMDDFYSEFKNVLQ 128
L LCNAM++ ++E K ++Q
Sbjct: 84 LDLCNAMNEVFTELKAIIQ 102
>08_02_1520 + 27648697-27649404
Length = 235
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 184 LKLCNAMDDFYSEFKNVLQ 128
L LCNAM++ ++E K ++Q
Sbjct: 84 LDLCNAMNEVFTELKAIIQ 102
>08_02_1519 + 27646256-27646960
Length = 234
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 184 LKLCNAMDDFYSEFKNVLQ 128
L LCNAM++ ++E K ++Q
Sbjct: 84 LDLCNAMNEVFTELKAIIQ 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,957,262
Number of Sequences: 37544
Number of extensions: 211008
Number of successful extensions: 668
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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