Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10n21
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117195-16|CAB55026.1| 186|Caenorhabditis elegans Hypothetical... 71 3e-13
AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical ... 69 1e-12
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 30 0.58
AC006708-16|AAF60431.2| 312|Caenorhabditis elegans Hypothetical... 29 1.8
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 28 2.4
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 28 2.4
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 28 2.4
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 27 4.1
U28943-1|AAA68356.1| 635|Caenorhabditis elegans Hypothetical pr... 27 4.1
AF077544-2|AAK39243.2| 644|Caenorhabditis elegans Hypothetical ... 27 4.1
AF016437-3|AAB65885.2| 405|Caenorhabditis elegans Hypothetical ... 27 4.1
U55369-2|AAK52183.2| 526|Caenorhabditis elegans Udp-glucuronosy... 27 5.5
U42833-4|AAA83579.1| 319|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z83319-5|CAB05907.2| 446|Caenorhabditis elegans Hypothetical pr... 26 9.5
U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 26 9.5
AF038606-7|AAB92021.1| 344|Caenorhabditis elegans Hypothetical ... 26 9.5
AF022968-4|AAB69886.2| 458|Caenorhabditis elegans Hypothetical ... 26 9.5
AF022968-3|AAV28363.1| 482|Caenorhabditis elegans Hypothetical ... 26 9.5
AF022967-2|AAB69880.1| 305|Caenorhabditis elegans Hypothetical ... 26 9.5
AC087078-1|AAG37943.1| 198|Caenorhabditis elegans Hypothetical ... 26 9.5
AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical ... 26 9.5
>AL117195-16|CAB55026.1| 186|Caenorhabditis elegans Hypothetical
protein Y57A10A.23 protein.
Length = 186
Score = 70.9 bits (166), Expect = 3e-13
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = -3
Query: 388 QNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGS-SQHKYFY 212
+ LS+HFVM+N D++EP + PDG YIPR++FL G + + N+ + Y+Y
Sbjct: 85 KKLSEHFVMVNTEDDDEPFEEEYRPDGKYIPRLLFLDKNGDLLQEFKNKKAEYKNYAYYY 144
Query: 211 SKPEQIVKSMRKILEKY 161
S P I+ SM+ +L+ +
Sbjct: 145 SSPADILNSMKDVLKHF 161
>AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical
protein F49H12.5 protein.
Length = 257
Score = 68.9 bits (161), Expect = 1e-12
Identities = 32/74 (43%), Positives = 46/74 (62%)
Frame = -3
Query: 382 LSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYFYSKP 203
LS+ FVM+N+ D+EEP ++PDG YIPRI+FL +G+ NE +KYFY P
Sbjct: 84 LSRKFVMVNVEDDEEPEDPKYSPDGGYIPRILFLDTDGN-PLKTNNERKYKNNKYFYPLP 142
Query: 202 EQIVKSMRKILEKY 161
QI+ M + L ++
Sbjct: 143 AQIIDGMERALLEF 156
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 30.3 bits (65), Expect = 0.58
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 346 EEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYFYS-KPEQIVKSMRKIL 170
E E + FAP GN+ +F EG+ N D +Q F++ PE++VK +
Sbjct: 1005 EVETPNRVFAPTGNHFIHDVFSQIEGA------NMDSENQQNIFFNFPPEKLVKKPPVVP 1058
Query: 169 EKYKHEQ 149
++ EQ
Sbjct: 1059 KEVVQEQ 1065
>AC006708-16|AAF60431.2| 312|Caenorhabditis elegans Hypothetical
protein Y110A7A.7 protein.
Length = 312
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -3
Query: 271 GSVDHDIYNEDGSSQHKYFYSKPEQIVKSMRKILEKYKHEQFDA*KIPNPHSMYGKYANL 92
G H ++N S H YFYS + + M K+L K D + HS+ G A++
Sbjct: 104 GRPKHKLHN--AGSVHYYFYSALKTMWSPMEKLLRGLKDSLPDHKIVFTGHSLGGAIASI 161
Query: 91 LEIYAIH*QPE 59
+ PE
Sbjct: 162 ASTVFVRNFPE 172
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 367 VMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNE 242
+M L+DE + + A +G PR I L+P + IYNE
Sbjct: 610 IMARLIDENDLNT---AGEGGCYPRCIILTPTRELTDQIYNE 648
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 367 VMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNE 242
+M L+DE + + A +G PR I L+P + IYNE
Sbjct: 610 IMARLIDENDLNT---AGEGGCYPRCIILTPTRELTDQIYNE 648
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 367 VMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNE 242
+M L+DE + + A +G PR I L+P + IYNE
Sbjct: 610 IMARLIDENDLNT---AGEGGCYPRCIILTPTRELTDQIYNE 648
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 237 GAANTNIFTANPNKS*NL*EKYSKNTNTNNSML 139
G ANTN + N N + N + YS +TN N+ L
Sbjct: 286 GNANTNNYNNNNNYNNNGQQTYSTSTNWQNNQL 318
>U28943-1|AAA68356.1| 635|Caenorhabditis elegans Hypothetical
protein E04F6.4 protein.
Length = 635
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 391 LQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQH 224
L+N +K V+I L+D + P + D + + R+ + +G + + G QH
Sbjct: 261 LENQAKSGVLIKLIDCQPPVMPEYDYDADELERLGLIQRQGLDMNTLNGGSGGVQH 316
>AF077544-2|AAK39243.2| 644|Caenorhabditis elegans Hypothetical
protein H22K11.2 protein.
Length = 644
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 348 MRKNPLAALLLQMEITYPG*YSCRQKDRLTMTSTTKTGAAN-TNIFTANP 202
MRKN L++Q+E Y C Q+ L + + K N +FT NP
Sbjct: 171 MRKNAGPVLMVQIEHFYGALGICDQQYLLQLANMAKENLGNDVVLFTVNP 220
>AF016437-3|AAB65885.2| 405|Caenorhabditis elegans Hypothetical
protein F13H6.4 protein.
Length = 405
Score = 27.5 bits (58), Expect = 4.1
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -3
Query: 394 DLQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYF 215
DL+ + M+ VDE E ++ P+ + + L P+G +D E+ HK F
Sbjct: 165 DLRKEAPKKQMMTGVDEYEGVIASMNPEFSPADAGLALFPKGVYGNDT-AENPEEMHKLF 223
Query: 214 YSK-PEQIVKSMRKILEKYKHEQF 146
Y K E + KS ++K E F
Sbjct: 224 YEKYVEGVDKSDDSAMKKRLCEAF 247
>U55369-2|AAK52183.2| 526|Caenorhabditis elegans
Udp-glucuronosyltransferase protein48 protein.
Length = 526
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -3
Query: 274 EGSVDHDIYNEDGSSQHKYFYSKPEQIVKSMRKILEKYKHEQFDA 140
+ S+ I+N D + + E++V + ++++EK K E+FDA
Sbjct: 96 QSSIWSKIFNTDSDPYQDEYTNMCEEMVTN-KELIEKLKKEKFDA 139
>U42833-4|AAA83579.1| 319|Caenorhabditis elegans Hypothetical
protein ZK430.2 protein.
Length = 319
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 391 LQNLSKHFVMINLVDEEEPASS 326
+Q+L KHF IN++ EEE ++
Sbjct: 62 VQSLQKHFKNINIIGEEEDTTA 83
>Z83319-5|CAB05907.2| 446|Caenorhabditis elegans Hypothetical
protein T02D1.4 protein.
Length = 446
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 56 LFWLSMN-RIYF*KICIFSIHRMWIRYLLSIELFVFVFF 169
++W+ +IYF + +F MW+ L++ E ++ VFF
Sbjct: 160 IYWVYYPYQIYF--VNLFGFCAMWLTVLMTAECYLHVFF 196
>U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical
protein T27E4.6 protein.
Length = 782
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 59 FWLSMNRIYF*KICIFSIHRMWIRYLLSIELFVFVFFEYFSHRFHDLFGFAVKIFVLAAP 238
FW ++ F C F +H M + +L +I+ + ++ FH + + LA
Sbjct: 642 FWRPFGKLSF---CAFIVHHMLLYFLFNIQEEAPKYTSFWHEYFHYTIPIVIYSYFLAFF 698
Query: 239 VFVV 250
+ VV
Sbjct: 699 LSVV 702
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 289 IFLSPEGSVDHDIYNEDGSSQHKYFY 212
IFL EGS D D E S+ H Y Y
Sbjct: 290 IFLDYEGSADSDALAELNSNAHLYEY 315
>AF038606-7|AAB92021.1| 344|Caenorhabditis elegans Hypothetical
protein C04C3.6 protein.
Length = 344
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +2
Query: 104 FSIHRMWIRYLLSIELFVFVFFEYFSHRFHD--------LFGFAVKIFVLAAPVFVVDVM 259
F +H W+ + ++ F+ VFF SHR D LF F+V I L P+ + ++
Sbjct: 112 FFVHWAWVA--MYVQRFLHVFFPLRSHRAGDKSKEIIGVLFAFSV-ISQLWTPILITELS 168
Query: 260 V 262
V
Sbjct: 169 V 169
>AF022968-4|AAB69886.2| 458|Caenorhabditis elegans Hypothetical
protein C10F3.4a protein.
Length = 458
Score = 26.2 bits (55), Expect = 9.5
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = -3
Query: 361 INLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYFYSKPEQIVKSM 182
I L E P++S+ AP NY P L +IY E+G+S H+ K E+ K++
Sbjct: 22 IQLPAEYSPSASS-APYFNYSPDDFILDLRSHQSDEIY-ENGNSNHE----KDEK--KAL 73
Query: 181 RKIL-EKYKH-EQFDA*KIP 128
+++L E++++ +Q++A P
Sbjct: 74 KELLHERWENAKQYNAFNYP 93
>AF022968-3|AAV28363.1| 482|Caenorhabditis elegans Hypothetical
protein C10F3.4b protein.
Length = 482
Score = 26.2 bits (55), Expect = 9.5
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = -3
Query: 361 INLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYFYSKPEQIVKSM 182
I L E P++S+ AP NY P L +IY E+G+S H+ K E+ K++
Sbjct: 46 IQLPAEYSPSASS-APYFNYSPDDFILDLRSHQSDEIY-ENGNSNHE----KDEK--KAL 97
Query: 181 RKIL-EKYKH-EQFDA*KIP 128
+++L E++++ +Q++A P
Sbjct: 98 KELLHERWENAKQYNAFNYP 117
>AF022967-2|AAB69880.1| 305|Caenorhabditis elegans Hypothetical
protein C13A2.9 protein.
Length = 305
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 277 PEGSVDHDIY-NEDGSSQHKYFYSKPEQIVKSMRKILEKYKHE 152
P +++ D+Y N+ G ++Y S E +K+ R EKYK E
Sbjct: 143 PSNAINKDLYENKLGGKYYQYAVSG-ENGMKNSRVYREKYKEE 184
>AC087078-1|AAG37943.1| 198|Caenorhabditis elegans Hypothetical
protein Y34F4.2 protein.
Length = 198
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Frame = +2
Query: 92 KICIFSIHRMWIRYLLSIELFVFVFFEYFSHRFHDLFGFAVKI--FVLAAPVFVVDVMVN 265
K+ +++ I L + ++F+F+E +H++ F + +K ++L A ++ V +N
Sbjct: 61 KVAVYTCLLSSIGQNLVVVAYIFLFYESQNHQYSRKFIYLLKFIKYMLLASTLLLIVGLN 120
Query: 266 ----RSFWRQEY-YPGYVISIW 316
+ W +E+ + Y S+W
Sbjct: 121 LLTLSAKWDEEHEFVRYGYSLW 142
>AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical
protein Y54E10BR.1 protein.
Length = 912
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 122 WIRYLLSIELFVFVFFEYFSHRFHDLFGFAVKIFVLA--APVFVVDVMVNRSFWRQEYYP 295
W+ +LS+E+FV F + F + IFVL F+ V V Q +Y
Sbjct: 510 WLNKVLSVEVFVKPFLGFVG------FSITICIFVLTFMDRAFLAAVFVLLMALPQ-FYS 562
Query: 296 GYVISIWSKS 325
++S WSK+
Sbjct: 563 HPIVSYWSKT 572
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,452,486
Number of Sequences: 27780
Number of extensions: 203670
Number of successful extensions: 659
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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