Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n20
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   2.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   4.3  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    27   4.3  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   5.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   5.6  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   5.6  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   7.5  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = -2

Query: 730 HKTSSLAEQLTNRA---ENNTNCNLLYESQLERFAHRRRSCIACDNIMAKDCSDPKNKLV 560
           H   S+ +Q T++    E N +  +L   + +R    ++  +  DN  + D      K  
Sbjct: 241 HSNISIKDQKTSKQFNPETNESVGILQNQESKRNEQIKQQYMPADNFGSNDNHSHNKKRR 300

Query: 559 PSILCEREDDLCYSMHTP 506
            S L    + LC + H P
Sbjct: 301 LSSLSTNNNHLCDNCHKP 318


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 195 ISSSPHISLGNKPTLPSKQFALS-SISPLSVVTLTSHLKQDIS 320
           ISS+P ISLG  PT  S   A S S S  S ++  S L+  ++
Sbjct: 4   ISSAPSISLGYPPTESSAHLAPSFSDSATSTLSFKSLLEDPVN 46


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +3

Query: 99  SLSQYFHQ*LYSGDLAXXXXXXXXXXXDFTTHISSSPHISLGNKPTLPSKQFALSSISPL 278
           ++S  F Q  Y   LA            +T H+       LG+ P+LP     +  ISP 
Sbjct: 117 AISSIFEQ-NYLSILASSALEIISAEHKYTAHLEQLMVALLGDDPSLPGPPHEVFGISPE 175

Query: 279 SVVTLTSHLKQDISLKTDFL 338
               LT  +++ +    +F+
Sbjct: 176 QCRELTITVQEALEKSKEFI 195


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 604 YHMRYTIDVDVQIFLIAIHTTSYNLYYSQHDSL 702
           +H+R+T  ++  + L+A  T   NL+Y +  +L
Sbjct: 451 FHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTL 483


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 183 FTTHISSSPHISLGNKPTLPSKQFALSSISPLSVVTLTSHLK 308
           FTT +S+S   S  N PT+PSK     S++  + ++   H K
Sbjct: 126 FTTSVSASSD-SFPNSPTVPSKFSLNPSVATSTNISPRRHAK 166


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 688 QHDSLVAQLEMKFCDTLNRVINVSDNLL 771
           Q DSL+   ++ + D ++ V+N  +NL+
Sbjct: 363 QEDSLMEDEDLSYMDDMSNVVNEDENLI 390


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 462 LAPMSVPAIFVTTYPFLKCHIFSPASAIGSIM 367
           +AP+S  A+ +  + F+K H    AS IG  M
Sbjct: 65  VAPLSYSAMALDAFQFMKDHKLDKASIIGHSM 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,721
Number of Sequences: 5004
Number of extensions: 75302
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)