Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n20
         (824 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein.                 31   6.7  
L40157-1|AAA79121.1| 1410|Homo sapiens endosome-associated prote...    31   6.7  
AC006316-1|AAD29127.1| 2126|Homo sapiens unknown protein.              31   6.7  

>U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein.
          Length = 3460

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 407  HFRNGYVVTKIA-GTDIGANIVIHIETSTIDNSKWSVH 517
            HF + +V+ +I  G +I  N V+  + +T+D+ KW +H
Sbjct: 2301 HFYSPWVIDQILIGGNISGNTVLEDDFTTLDSRKWLLH 2338


>L40157-1|AAA79121.1| 1410|Homo sapiens endosome-associated protein
            protein.
          Length = 1410

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -2

Query: 823  DKAYIKVTK-RRKVNDATTINYQIHLSRDLMYHKTSSLAEQLTNRAENNTNCNLLYESQL 647
            +K   KV + +RK+++ T +      ++ L    T +L  +    AE+N   N +   + 
Sbjct: 1307 EKLQTKVLELQRKLDNTTAVQELGRENQSLQIKHTQALNRKW---AEDNEVQNCMACGKG 1363

Query: 646  ERFAHRRRSCIACDNIMAKDCSDPKNKLVPS 554
                 RR  C  C NI   +CS  KN L PS
Sbjct: 1364 FSVTVRRHHCRQCGNIFCAECS-AKNALTPS 1393


>AC006316-1|AAD29127.1| 2126|Homo sapiens unknown protein.
          Length = 2126

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 407  HFRNGYVVTKIA-GTDIGANIVIHIETSTIDNSKWSVH 517
            HF + +V+ +I  G +I  N V+  + +T+D+ KW +H
Sbjct: 1871 HFYSPWVIDQILIGGNISGNTVLEDDFTTLDSRKWLLH 1908


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,591,109
Number of Sequences: 237096
Number of extensions: 2479750
Number of successful extensions: 5621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5621
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)