Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n20
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    28   0.12 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 395 ENIWHFRNGYVVTKIAGTDIGANIVI 472
           ENI H R+GY V + A T +GA  ++
Sbjct: 395 ENIAHTRSGYSVARFAETALGAAALV 420


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 625 DVDVQIFLIAIHTTSYNLYYSQHDS 699
           +VD +++ +A+   ++NLYY+   S
Sbjct: 247 EVDNKVYGMALSPVTHNLYYNSPSS 271


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = -2

Query: 529 LCYSMHTPFGIIDRGCFNVNYNIS 458
           + ++M T FG+++ GC ++   ++
Sbjct: 40  IIFTMQTGFGMLESGCVSLKNEVN 63


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 481 FNVNYNISTYVCSCNLCNYISISEMPYIFSSKRDWVD 371
           FNV +N+ T++C      +  +SE    +   ++W+D
Sbjct: 43  FNVYWNVPTFMCHKYGLRFEEVSEK---YGILQNWMD 76


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 220 WVINLRYLPSNLR 258
           W+ + RYLP++LR
Sbjct: 803 WIAHDRYLPNSLR 815


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,547
Number of Sequences: 438
Number of extensions: 5051
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)