Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n18
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    27   3.2  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   4.2  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   4.2  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   4.2  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   5.5  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    26   7.3  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   9.7  

>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 368 KIFRIEHNRPFLLT-LHSVQ*LARKLGLLHSVTLHFGCVIKELISGIP 228
           +I+  E N  F    LH+++  A  L  L S   H G  IKEL  G P
Sbjct: 123 RIYYDERNETFTFKPLHNIRSGAGLLAYLDSQKTHVGMSIKELRDGWP 170


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 284 HSVTLH-FGCVIKELISGIPRNCGRNQS 204
           HSV L+ FGC++ E+ S  P   GRN++
Sbjct: 212 HSVDLYAFGCIVFEIYSLKPLFPGRNET 239


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 92  DFTKNNGTLLHISQNKQINTVYFNEKH 172
           D T  NG+L  +S +  IN V+ NE H
Sbjct: 273 DSTNVNGSLSPLSNSSSINQVHQNETH 299


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 266 FGCVIKELISGIPRNCGRNQS 204
           FGC++ EL +G+P   G N++
Sbjct: 704 FGCILAELFTGVPLFPGGNET 724


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 581 CASTCTDVRQIRSPRQADICRRYTYILSHKNQD-KYN*LYIIEILKYQAR 727
           C++ CT++ +  SP +  +C   +  L    +D KYN   + +++K   R
Sbjct: 425 CSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVVTR 474


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 128 SQNKQINTVYFNEKHVKKSLVSSDFRTDFFRNFL 229
           S N  +  VY N+K ++K LV  D      R+FL
Sbjct: 228 SLNTSVAKVYINQKFIRKLLVLFDSEDPRERDFL 261


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 211  FLPQFL-GIPEINSLMTHPKCNVTECNKPSLRASYWTE-CSVKRNGRL 348
            F P F+  +   +  MT  KC+    N  ++  SYWT  C V +   L
Sbjct: 995  FPPNFIHSLDATHMFMTCLKCSEQNINFAAVHDSYWTHACDVDQMNSL 1042


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,155
Number of Sequences: 5004
Number of extensions: 77746
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)