Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n17
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   4.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   5.7  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   7.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   7.5  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 632 NKFYNFTPKDMGALPDELSXNM 567
           N  ++FT +D+ AL DELS N+
Sbjct: 345 NNPFSFTSQDVEALKDELSSNL 366


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 461 YAEDGWKFVKIGENVFEVIKPCTRCVMTTVDPETGVR 351
           Y E+G  +  + +N F   KP T   + T  P  G R
Sbjct: 102 YIENGGLYAFVFDNTFSKTKPKTVTFLLTAQPYNGPR 138


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 611 PKDMGALPDELSXNMINEASVEDLNTRLNEN 519
           P+D  A P E    +I +AS++ L +R NE+
Sbjct: 181 PEDYEASPGEPVEPLITDASLQRLKSRANED 211


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 177 ICYSXYINRIXQGNCAAGFTSQRQLHAHTRRTAGRP 284
           +C S Y  R       +   ++R+ HA TR+T  +P
Sbjct: 221 VCDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKP 256


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 446 WKFVKIGENVFEVIKPCTR 390
           WK+   G NVFE I P  R
Sbjct: 151 WKYESPGNNVFEAISPHER 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,999
Number of Sequences: 5004
Number of extensions: 41401
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)