Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10n17
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669... 79 4e-15
09_06_0275 + 21976990-21977140,21977239-21977388,21977775-219779... 69 3e-12
09_06_0276 + 21980147-21980285,21980369-21980550,21980867-219811... 68 6e-12
05_04_0252 - 19386942-19387048,19388332-19388947 31 1.1
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925... 29 2.6
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 29 3.4
07_03_0109 + 13502604-13503059,13503729-13504682 29 4.5
>06_03_1072 +
27365834-27365945,27366360-27366464,27366844-27366929,
27367445-27367631,27368031-27368142,27368235-27368337,
27368424-27368469,27368670-27368708,27368803-27368959,
27369031-27369133,27369337-27369453,27369880-27369957,
27370044-27370145,27370252-27370345,27370432-27370542,
27370643-27370707,27370949-27371097,27371349-27371581,
27371778-27371908,27372016-27372126,27372210-27372326
Length = 785
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Frame = -1
Query: 569 MINEASVEDLNTRLNE---NCR----VTTRNFRPNFVVEGAEPYAEDGWKFVKIGENVFE 411
+I+E S+ DLN+RLN +C+ V FRPN V+ G+ PY+ED WK ++IGE F
Sbjct: 651 LISEESISDLNSRLNSGKGDCKQKLPVDAMRFRPNLVISGSSPYSEDNWKKLRIGEACFT 710
Query: 410 VIKPCTRCVMTTVDPETGVRNSASEPLNTLKKYRQ 306
+ C RC M + ++G + EPL TL YR+
Sbjct: 711 SMGGCNRCQMINLHQDSGQVLKSKEPLATLASYRR 745
>09_06_0275 +
21976990-21977140,21977239-21977388,21977775-21977951,
21978073-21978161,21978259-21978323,21978445-21978547,
21979042-21979152,21979306-21979374,21979558-21979614
Length = 323
Score = 68.9 bits (161), Expect = 3e-12
Identities = 34/87 (39%), Positives = 51/87 (58%)
Frame = -1
Query: 569 MINEASVEDLNTRLNENCRVTTRNFRPNFVVEGAEPYAEDGWKFVKIGENVFEVIKPCTR 390
M ++ S++ LN L E V FRPN +V+G PY+ED WK +KI + F+ +K C R
Sbjct: 186 MASQGSLDALNEVLKEP--VPMNRFRPNILVDGCHPYSEDLWKTIKINKLTFQGVKLCNR 243
Query: 389 CVMTTVDPETGVRNSASEPLNTLKKYR 309
C + T++ E G+ +EP TL +R
Sbjct: 244 CKVPTINQENGI--LGTEPTETLLTFR 268
>09_06_0276 +
21980147-21980285,21980369-21980550,21980867-21981137,
21981263-21981351,21981474-21981538,21981656-21981758,
21982215-21982325,21982441-21982509,21982553-21982687
Length = 387
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/93 (36%), Positives = 52/93 (55%)
Frame = -1
Query: 587 DELSXNMINEASVEDLNTRLNENCRVTTRNFRPNFVVEGAEPYAEDGWKFVKIGENVFEV 408
D+ + ++ SV+ LN+ L E V FRPN +V+G PY+ED WK +KIG+ F
Sbjct: 218 DDFPFLLASQGSVDALNSILKEP--VPMNRFRPNIIVDGCHPYSEDLWKTIKIGKLTFLG 275
Query: 407 IKPCTRCVMTTVDPETGVRNSASEPLNTLKKYR 309
+K C RC + T++ + G+ EP L+ R
Sbjct: 276 VKLCDRCKVPTINQDNGI--PGEEPTEALQALR 306
>05_04_0252 - 19386942-19387048,19388332-19388947
Length = 240
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 327 IQWFRSRIANASFWID--CGHHASRARLYNFEHVFADLH 437
I WFR A A+ ID CGH A +E VFA LH
Sbjct: 38 IGWFRGEFAAANAVIDALCGHLAQIGGDAEYEAVFAALH 76
>03_06_0490 +
34289904-34289967,34291912-34292237,34292401-34292536,
34292651-34292793,34292880-34293003,34293562-34293963,
34294121-34294176
Length = 416
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 515 RVTTRNFRPNFVV-EGAEPYAEDGWKFVKIGENVFEVIKPCT 393
R+ TRNFRP+ V+ EG GW I EN KP T
Sbjct: 72 RIATRNFRPDSVLGEGGFGSVYKGW----IDENTLSACKPGT 109
>04_04_0891 +
29130494-29130904,29131043-29131102,29131203-29131409,
29131520-29131645,29131767-29131823,29131946-29132014
Length = 309
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 330 QWFRSRIANASFW-IDCGHHASRARLYNFEHVFADLHEFPSVFSVRLSAFHHEI 488
QW + +AS W + HH +R + VFA + P++ + FH I
Sbjct: 165 QWAHRSLWHASLWHMHESHHRAREGPFELNDVFAITNAVPAISLLAYGFFHRGI 218
>07_03_0109 + 13502604-13503059,13503729-13504682
Length = 469
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = -1
Query: 629 KFYNFTPKDMGALPDELSXNMINEASVEDLNTRLNENCRVTTRNFRPN 486
K+++F PK++ AL + ++ + +L T + CR + + P+
Sbjct: 253 KYFSFGPKEISALRSLIPAHLTRSTTAFELLTAVMWRCRTSALGYEPD 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,066
Number of Sequences: 37544
Number of extensions: 253429
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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