Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n17
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88177-7|AAB42288.1|  339|Caenorhabditis elegans Hypothetical pr...    87   1e-17
AF038619-4|AAB92074.1|  340|Caenorhabditis elegans Hypothetical ...    86   2e-17
Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical pr...    79   4e-15
Z69793-3|CAA93672.2|  709|Caenorhabditis elegans Hypothetical pr...    65   5e-11
Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    27   9.2  

>U88177-7|AAB42288.1|  339|Caenorhabditis elegans Hypothetical
           protein F53E10.1 protein.
          Length = 339

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 41/100 (41%), Positives = 60/100 (60%)
 Frame = -1

Query: 608 KDMGALPDELSXNMINEASVEDLNTRLNENCRVTTRNFRPNFVVEGAEPYAEDGWKFVKI 429
           KD     D     +  EAS++ +N +L++  +VT RNFRP+  +EG   + ED W  ++I
Sbjct: 198 KDNSGFTDLAPFLIATEASLKAVNEKLDK--KVTMRNFRPSIYIEGCAAWDEDKWAEIRI 255

Query: 428 GENVFEVIKPCTRCVMTTVDPETGVRNSASEPLNTLKKYR 309
           GE   E   PCTRCV+TTVDPE G  +   +PL  L+++R
Sbjct: 256 GEAHLECFAPCTRCVLTTVDPEKGEMSKEMQPLKKLREFR 295


>AF038619-4|AAB92074.1|  340|Caenorhabditis elegans Hypothetical
           protein F56A11.5 protein.
          Length = 340

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 42/106 (39%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
 Frame = -1

Query: 620 NFTPK--DMGALPDELSXNMINEASVEDLNTRLNENCRVTTRNFRPNFVVEGAEPYAEDG 447
           N  PK  D  A  D     + ++AS++DLN++L++N  V++ NFRP  VV+    + ED 
Sbjct: 194 NEVPKRIDDTAYADLAPYMITSQASLDDLNSKLDQN--VSSINFRPCIVVDDCAAWDEDK 251

Query: 446 WKFVKIGENVFEVIKPCTRCVMTTVDPETGVRNSASEPLNTLKKYR 309
           W  ++IG+   +  KPCTRC++TTV+PETG ++   +PL  L+++R
Sbjct: 252 WLDLRIGDVEMQCFKPCTRCILTTVNPETGTKDKDMQPLKKLREFR 297


>Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.7 protein.
          Length = 339

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
 Frame = -1

Query: 620 NFTPK--DMGALPDELSXNMINEASVEDLNTRLNENCRVTTRNFRPNFVVEGAEPYAEDG 447
           N  PK  D     D    ++  +AS++ LN +L+   ++T R FRP+  +EG   + ED 
Sbjct: 192 NPVPKRNDDSGFTDLAPFHIATDASLKVLNEKLDN--KITMRYFRPSIYIEGCAAWDEDK 249

Query: 446 WKFVKIGENVFEVIKPCTRCVMTTVDPETGVRNSASEPLNTLKKYRQIXXXXXXXXXXXX 267
           W  ++IG+   E   PCTRCV+TTVDP  G  +   +PL  L+++R +            
Sbjct: 250 WAEIRIGDAHLECFAPCTRCVLTTVDPVKGEMSKEMQPLKKLREFRLVPDGKMRKVHMES 309

Query: 266 XRMGVQLALRSKPGGTVSLXDPIYV 192
              GV   L ++  G +     +YV
Sbjct: 310 PVFGVYAGLVNE--GYIHTGQTVYV 332


>Z69793-3|CAA93672.2|  709|Caenorhabditis elegans Hypothetical
           protein R03A10.3 protein.
          Length = 709

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 44/118 (37%), Positives = 58/118 (49%)
 Frame = -1

Query: 662 QSCREQRVTANKFYNFTPKDMGALPDELSXNMINEASVEDLNTRLNENCRVTTRNFRPNF 483
           Q+CR  RV  +   NF         ++    +INEASV  L+  +N   R     FR N 
Sbjct: 569 QNCRLLRVAEDSKKNFV--------NDSPFLLINEASVYMLSRYINMEVREILTRFRSNI 620

Query: 482 VVEGAEPYAEDGWKFVKIGENVFEVIKPCTRCVMTTVDPETGVRNSASEPLNTLKKYR 309
           VV G  P+ ED  K + I    FEV+  CTRC M  VDP TG ++ +   L  L+ YR
Sbjct: 621 VVRGLPPFIEDTAKRLSIENLEFEVVDKCTRCEMICVDPMTGEKDPSL--LLALRDYR 676


>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 228 RRHSFLXRSYLCSXNSRFNFFL 163
           ++HSFL ++Y C  N   NF L
Sbjct: 233 KQHSFLWKNYKCWHNKNLNFLL 254


>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
            Y6B3B.1 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 312  IFFQCIQWFRSRIANASFWIDCGHHASRARLYNFEHVFADLHE 440
            I  Q + W R+ +      I   ++  +AR YNF + F + H+
Sbjct: 1781 ILGQAVMWARNEVVIEEELIQILNNHGQAREYNFFYAFIEAHD 1823


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
            protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 312  IFFQCIQWFRSRIANASFWIDCGHHASRARLYNFEHVFADLHE 440
            I  Q + W R+ +      I   ++  +AR YNF + F + H+
Sbjct: 1781 ILGQAVMWARNEVVIEEELIQILNNHGQAREYNFFYAFIEAHD 1823


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,355
Number of Sequences: 27780
Number of extensions: 236688
Number of successful extensions: 583
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)