Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n17
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.28 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 219 CAAGFTSQRQLHAHTRRTAG 278
           C  GFT  +QL  HTR   G
Sbjct: 209 CGKGFTCSKQLKVHTRTHTG 228


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 476 PPRNSVGNCVLLHDSSHSNVCSS 544
           PP +  GN  +L  S H N+CS+
Sbjct: 356 PPNDGNGN--ILSPSIHDNICSN 376


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 464  AQRLPPRNSVGNCVLLHDSSHSNVCSSPLP 553
            A  L P N++ +  + H+ + +  C+SP P
Sbjct: 1727 AAGLHPNNTLLHSFMYHEHAMTEGCASPPP 1756


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 464  AQRLPPRNSVGNCVLLHDSSHSNVCSSPLP 553
            A  L P N++ +  + H+ + +  C+SP P
Sbjct: 1723 AAGLHPNNTLLHSFMYHEHAMTEGCASPPP 1752


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 218 LCRRVYFAAPVARPYAENCRTTCALLRSLF 307
           +C   +F   + RP+ +N     A L SLF
Sbjct: 383 VCWLPFFVLALVRPFLKNPDAIPAFLSSLF 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,392
Number of Sequences: 438
Number of extensions: 2925
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)