Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n15
         (840 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075582-1|AAL68387.1|  841|Drosophila melanogaster SD08161p pro...    30   4.5  
AJ312282-1|CAC41644.1|  841|Drosophila melanogaster nuclear RNA ...    30   4.5  
AE014296-2758|AAF49447.3|  841|Drosophila melanogaster CG4118-PB...    30   4.5  
AE014296-2757|AAF49448.3|  841|Drosophila melanogaster CG4118-PA...    30   4.5  

>AY075582-1|AAL68387.1|  841|Drosophila melanogaster SD08161p
           protein.
          Length = 841

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 84  FLREYNDLFFKHLN*FQYSKSNQVSSVACHYI*YTNSNTP 203
           +LRE+ +  F+H N ++Y   N + ++ C+Y    N  TP
Sbjct: 593 YLREFENDEFRH-NLYKYYSENSIFTLTCNYNVVQNHQTP 631


>AJ312282-1|CAC41644.1|  841|Drosophila melanogaster nuclear RNA
           export factor 2 (NXF2) protein.
          Length = 841

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 84  FLREYNDLFFKHLN*FQYSKSNQVSSVACHYI*YTNSNTP 203
           +LRE+ +  F+H N ++Y   N + ++ C+Y    N  TP
Sbjct: 593 YLREFENDEFRH-NLYKYYSENSIFTLTCNYNVVQNHQTP 631


>AE014296-2758|AAF49447.3|  841|Drosophila melanogaster CG4118-PB,
           isoform B protein.
          Length = 841

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 84  FLREYNDLFFKHLN*FQYSKSNQVSSVACHYI*YTNSNTP 203
           +LRE+ +  F+H N ++Y   N + ++ C+Y    N  TP
Sbjct: 593 YLREFENDEFRH-NLYKYYSENSIFTLTCNYNVVQNHQTP 631


>AE014296-2757|AAF49448.3|  841|Drosophila melanogaster CG4118-PA,
           isoform A protein.
          Length = 841

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 84  FLREYNDLFFKHLN*FQYSKSNQVSSVACHYI*YTNSNTP 203
           +LRE+ +  F+H N ++Y   N + ++ C+Y    N  TP
Sbjct: 593 YLREFENDEFRH-NLYKYYSENSIFTLTCNYNVVQNHQTP 631


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,538,363
Number of Sequences: 53049
Number of extensions: 533016
Number of successful extensions: 914
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)