Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n15
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    34   0.11 
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      34   0.11 
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92830-16|CAO82027.1|  197|Caenorhabditis elegans Hypothetical p...    28   9.5  

>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +1

Query: 310 LTTTYI-PLL--PLNPSQFNQQLFILPFKLNTIFNVATFNPFLLLQLQFDQKYTFIQPYN 480
           +TT Y+ PLL   ++P + N  L + P  ++ +F    F+ FLL+    +  YTF+  + 
Sbjct: 275 VTTRYLSPLLLSSISPRRDNHSLLLTP--ISALF---FFSEFLLIVRHHETIYTFLSSFL 329

Query: 481 HTTLTSLLTHYIK 519
             T  +L TH+I+
Sbjct: 330 FDTQNTLTTHWIR 342


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +1

Query: 310 LTTTYI-PLL--PLNPSQFNQQLFILPFKLNTIFNVATFNPFLLLQLQFDQKYTFIQPYN 480
           +TT Y+ PLL   ++P + N  L + P  ++ +F    F+ FLL+    +  YTF+  + 
Sbjct: 268 VTTRYLSPLLLSSISPRRDNHSLLLTP--ISALF---FFSEFLLIVRHHETIYTFLSSFL 322

Query: 481 HTTLTSLLTHYIK 519
             T  +L TH+I+
Sbjct: 323 FDTQNTLTTHWIR 335


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 313  TTTYIPLLPLNPSQFNQQLFILPFKLNTI-FNVATFNPFLLLQLQF 447
            + T +PL P+N S FNQ   +L   +N   F +A FN  L  QL F
Sbjct: 2503 SNTGLPLTPINMSDFNQ---LLAKSINRFAFEIANFNCPLTSQLAF 2545


>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 289 FPYIP*NLTTTYIPLLPLNPSQFNQQLFILPFKLNTIFNVA 411
           F YIP    + ++ +L +N   FNQ LF  PF +  IF VA
Sbjct: 142 FYYIPSIAVSLFVSVLNVN---FNQLLFSFPFYIYVIFYVA 179


>Z92830-16|CAO82027.1|  197|Caenorhabditis elegans Hypothetical
           protein F11A5.17 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 449 SNWSWRSKKGLKVATLKIVL-SLKGK 375
           S+WSW+ K+G +  T+KI+L   KGK
Sbjct: 83  SHWSWKGKEGTR-NTIKILLYQFKGK 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,258,865
Number of Sequences: 27780
Number of extensions: 292864
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)