Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10n14
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 193 3e-50
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 100 2e-22
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 94 2e-20
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 92 1e-19
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 92 1e-19
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 85 1e-17
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 77 2e-15
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 76 5e-15
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 73 4e-14
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 66 4e-12
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 64 3e-11
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 61 2e-10
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 33 0.035
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 2.3
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 27 3.1
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 26 5.4
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 25 9.4
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 193 bits (470), Expect = 3e-50
Identities = 86/155 (55%), Positives = 110/155 (70%)
Frame = -2
Query: 776 SAAQLRITKDLNEXNLPKTCNTEFPDPDDLLNFKLIICPDEGFYRGGKFVFSFKVGPNYP 597
S AQ+RI KD+ + +P T +T +PDP L L I PDEG+Y+GGKF F ++ NYP
Sbjct: 22 SPAQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLEIRPDEGYYKGGKFKFRIQIDDNYP 81
Query: 596 HEPPKVKCETAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNK 417
H+PPKVKC +YHPNID+EGNVCLNILR+DW PVL +NSI+ GLQ+LFL PN EDPLNK
Sbjct: 82 HDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNK 141
Query: 416 EAADELQSNRRLFEQHVQRAMRGGYVGTSYFERCL 312
EAA +L + + F V+ AM+GG V F+ +
Sbjct: 142 EAAADLHKDPQGFASRVRTAMKGGLVNGISFDNVM 176
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 100 bits (240), Expect = 2e-22
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Frame = -2
Query: 761 RITKDLNEXNL--PKTCNTEFPDPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHE 591
RI ++L + P +C+ P DDL +++ I P + Y GG F S +YP +
Sbjct: 5 RINRELADLGKDPPSSCSAG-PVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 590 PPKVKCETAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEA 411
PPKV T +YHPNI+ G++CL+ILR+ W P LT++ ++ + L +PNP+DPL E
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
Query: 410 ADELQSNRRLFE 375
A +++R +E
Sbjct: 124 AHVYKTDRSRYE 135
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 93.9 bits (223), Expect = 2e-20
Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Frame = -2
Query: 761 RITK---DLNEXNLPKTCNTEFPDPDDLLNFKLI-ICPDEGFYRGGKFVFSFKVGPNYPH 594
R+TK DL E +P D D+L ++ + P + Y GGKF FS K +YP
Sbjct: 11 RLTKEYSDLREHPIPDI-RVNLVD-DNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPF 68
Query: 593 EPPKVKCETAVYHPNIDLEGNVCLNILRED-WKPVLTVNSIVYGLQYLFLEPNPEDPLNK 417
+PP ++ T +YHPN D EGNVCL IL++ +KP + + S++ + L EPNP+DPL
Sbjct: 69 QPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVA 128
Query: 416 EAADELQSNRRLFEQ 372
A++ +++R F++
Sbjct: 129 SIAEQYRNDRPSFDK 143
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Frame = -2
Query: 704 PDPDDLLNFKLII-CPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNV 528
P D+L FK+ + P + Y GGKF + YP PP V+ T +YHPN+D G +
Sbjct: 26 PTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRI 85
Query: 527 CLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 390
CL+ L++DW P L + +++ +Q L PNP+DPL+ + A + N
Sbjct: 86 CLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKEN 131
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 91.9 bits (218), Expect = 1e-19
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Frame = -2
Query: 707 FPDPD-DLLNFK-LIICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEG 534
FPD D +LL++ I P + +Y G KF S NYP+ PP + + ++HPN+D+ G
Sbjct: 51 FPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSG 110
Query: 533 NVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAAD 405
N+CL+IL++ W V V +I+ LQ L EPN PLN +AA+
Sbjct: 111 NICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAE 153
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 84.6 bits (200), Expect = 1e-17
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Frame = -2
Query: 761 RITKDLNEXNLPKTCNTE-FPDPDDLLNFKLIICPDEGF-YRGGKFVFSFKVGPNYPHEP 588
RI K+L + K + + DD+ + K + EG Y GG FV ++ +YP P
Sbjct: 8 RIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRP 67
Query: 587 PKVKCETAVYHPNIDLE-GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEA 411
PK+ +T +YHPN+ + G +CL+IL++ W PV T+ S + LQ L P P +P + +
Sbjct: 68 PKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQV 127
Query: 410 ADELQSNRRLF 378
A N + F
Sbjct: 128 AQVYLQNYQQF 138
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 77.4 bits (182), Expect = 2e-15
Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Frame = -2
Query: 779 ASAAQLRITKDLNEX--NLPKTCNTEFPDPDDLLNFK-LIICPDEGFYRGGKFVFSFKVG 609
+SA++ + K L E N P+ + D + ++ +II P++ Y GG F +
Sbjct: 3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFP 62
Query: 608 PNYPHEPPKVKCETAVYHPNIDLEGNVCLNILR-------------EDWKPVLTVNSIVY 468
+YP PPK+K T ++HPN+ G VC++IL E W PV + +I+
Sbjct: 63 QDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILI 122
Query: 467 GLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 351
+ + PN E P N +AA E + N + F++ V+R +R
Sbjct: 123 SVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVR 161
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 76.2 bits (179), Expect = 5e-15
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Frame = -2
Query: 779 ASAAQLRITKDLNEXNL-PKTCNTEFPDPDDLLNFK-LIICPDEGFYRGGKFVFSFKVGP 606
++ A+ R+ +D P + P D+++ + +II P + + G F
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDE 61
Query: 605 NYPHEPPKVKCETAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDP 426
YP++PP VK + ++HPN+ G +CL+IL+ W P V +I+ +Q L +PN P
Sbjct: 62 QYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASP 121
Query: 425 LNKEAADELQSNRRLFEQHVQRAMRGGY 342
N EAA + N++ + + V++ + +
Sbjct: 122 ANAEAAQLHRENKKEYVRRVRKTVEDSW 149
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 73.3 bits (172), Expect = 4e-14
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Frame = -2
Query: 692 DLLNFKL-IICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNI 516
DL+N+K+ I + + GG + + YP PPK + ++HPN+ G VCL+I
Sbjct: 37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 96
Query: 515 LRED--WKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 351
L E+ WKP +T+ I+ G+Q L +PN P EA + ++ +E+ V+ R
Sbjct: 97 LNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAR 153
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 66.5 bits (155), Expect = 4e-12
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = -2
Query: 692 DLLNFKLII-CPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNID-LEGNVCLN 519
D+ ++K +I P E Y GG++V V YP PP V +T + HPNI G VC++
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMD 92
Query: 518 ILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQS 393
IL+ W P ++ S + L + PLN +AA L++
Sbjct: 93 ILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRT 134
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 63.7 bits (148), Expect = 3e-11
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = -2
Query: 662 PDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNID-LEGNVCLNILREDWKPVL- 489
P E Y GG + ++ YP + P + ++HPNID L G+VCL+++ + W P+
Sbjct: 39 PSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFD 98
Query: 488 TVNSIVYGLQYLFLEPNPEDPLNKEAA 408
+N L L PN DPLN EAA
Sbjct: 99 MINIFEVFLPQLLRYPNASDPLNGEAA 125
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 61.3 bits (142), Expect = 2e-10
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Frame = -2
Query: 752 KDLNEXNLPKTCNTEFPDPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHEPPKVK 576
K+L E N P + DD + +I PD + GG + + K +YP PP +K
Sbjct: 15 KELTE-NGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLK 73
Query: 575 CETAVYHPNIDLEGNVCLNILR-------------EDWKPVLTVNSIVYGLQYLFLEPNP 435
E +HPN+ +G VC++IL E W PV +V I+ + + EPN
Sbjct: 74 FECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPND 133
Query: 434 EDPLNKEAADELQSNRRLFEQHVQRAMR 351
E N +A + +R + + V+R R
Sbjct: 134 ESGANIDACKMWREDREEYCRVVRRLAR 161
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 33.5 bits (73), Expect = 0.035
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = -2
Query: 704 PDPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNV 528
P +++L + II P + Y GG++ + P+YP +PP ++ T +
Sbjct: 29 PATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRL 86
Query: 527 CLNIL---REDWKPVLTVNSIVYGL 462
CL+ + W P V++I+ GL
Sbjct: 87 CLSFSDFHPKSWNPSWMVSTILVGL 111
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 89 YTSRIDRSYIFRVDIKFKHSYVFIVKLKK 3
Y S + R+Y+F D + + +Y F+V L+K
Sbjct: 290 YCSNVGRTYLFDPDSEQQKNYSFLVALQK 318
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 428 PLNKEAADELQSNRRLFEQHVQRAMRGGYVGTSYF 324
PL E +LQ R+L +H+Q GG VGT F
Sbjct: 49 PLQPEDTQDLQ--RKLKPRHMQMIAIGGCVGTGLF 81
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = -3
Query: 457 IYSWNQTLKIPSTRKQLTSSKATGDFSNNTFRELCEAATSAHLISNDASNENLHTCKKC 281
+Y N TL + + + Q +N + ++ S ++ ++ S+ NLH KC
Sbjct: 114 VYFENDTLYLANLKNQNIGDNVIPYPNNKAVKVSAKSLRSCNISISNCSSVNLHNATKC 172
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 418 RKQLTSSKATGDFSNNTFRELCEAATSAHLISNDASNENLHTCKKC 281
RK + S TGD ++ F EAAT A L D+ N+ T KC
Sbjct: 157 RKYMECSSLTGDGVDDVF----EAATRAALTVRDSENDKSST--KC 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,095
Number of Sequences: 5004
Number of extensions: 62090
Number of successful extensions: 209
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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