Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10n14
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 100 1e-21
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 100 1e-21
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 97 2e-20
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 95 7e-20
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 95 7e-20
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 91 6e-19
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 87 1e-17
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 78 6e-15
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 75 6e-14
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 75 8e-14
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 75 8e-14
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 66 3e-11
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 65 6e-11
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 64 1e-10
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 62 6e-10
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 61 8e-10
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 61 1e-09
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 53 2e-07
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 46 3e-05
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 39 0.005
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 34 0.10
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.94
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z37092-8|CAA85460.2| 327|Caenorhabditis elegans Hypothetical pr... 28 8.8
AY037792-1|AAK94756.1| 327|Caenorhabditis elegans SRA-12 protein. 28 8.8
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 100 bits (240), Expect = 1e-21
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Frame = -2
Query: 761 RITKDLNEXNL--PKTCNTEFPDPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHE 591
RI K+L + P C+ P DDL +++ I P E Y+GG F + +YP +
Sbjct: 5 RIQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 590 PPKVKCETAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEA 411
PPKV T +YHPNI+ G++CL+ILR W P LT++ ++ + L +PNP+DPL E
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 410 ADELQSNRRLFEQ 372
A +++R + Q
Sbjct: 124 ARIYKTDRERYNQ 136
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 100 bits (240), Expect = 1e-21
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Frame = -2
Query: 761 RITKDLNEXNL--PKTCNTEFPDPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHE 591
RI K+L + P C+ P DDL +++ I P E Y+GG F + +YP +
Sbjct: 5 RIQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 590 PPKVKCETAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEA 411
PPKV T +YHPNI+ G++CL+ILR W P LT++ ++ + L +PNP+DPL E
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 410 ADELQSNRRLFEQ 372
A +++R + Q
Sbjct: 124 ARIYKTDRERYNQ 136
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 96.7 bits (230), Expect = 2e-20
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Frame = -2
Query: 725 KTCNTEFPDPDDLLNFKLIICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNI 546
K + E P L +L + P EG YRGGKF F V P Y + PP VKC T V+HPNI
Sbjct: 46 KLWHLEVPSTSCLHELELTVTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNI 105
Query: 545 DLEGNVCLNILRED------WKPVLTVNSIVYGLQYLFLE-PNPEDPLNKEAADELQSNR 387
+ +G++CL+ILR++ W+P + +V+GL LF + + D LN +AA NR
Sbjct: 106 NEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNR 165
Query: 386 RLFEQHVQ 363
F V+
Sbjct: 166 ESFNHRVR 173
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 94.7 bits (225), Expect = 7e-20
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Frame = -2
Query: 704 PDPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNV 528
P D++L ++ II P E + G F S + YP++PP VK + ++HPN+ +G++
Sbjct: 28 PTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSI 87
Query: 527 CLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMRG 348
CL+IL+ W P V +I+ +Q L EPNP P N AA Q NRR +E+ VQ+ +
Sbjct: 88 CLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
Query: 347 GYV 339
++
Sbjct: 148 SWL 150
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 94.7 bits (225), Expect = 7e-20
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Frame = -2
Query: 704 PDPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNV 528
P D++L ++ II P E + G F S + YP++PP VK + ++HPN+ +G++
Sbjct: 28 PTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSI 87
Query: 527 CLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMRG 348
CL+IL+ W P V +I+ +Q L EPNP P N AA Q NRR +E+ VQ+ +
Sbjct: 88 CLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
Query: 347 GYV 339
++
Sbjct: 148 SWL 150
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 91.5 bits (217), Expect = 6e-19
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = -2
Query: 704 PDPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNV 528
PD + F ++I PD+ + GG F + YP PKV+ T +YHPNID G +
Sbjct: 28 PDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNIDKLGRI 87
Query: 527 CLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 390
CL+IL++ W P L + +++ +Q L PNPEDPL + A++ ++N
Sbjct: 88 CLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQWKTN 133
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 87.0 bits (206), Expect = 1e-17
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Frame = -2
Query: 692 DLLNFKLIICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNIL 513
+LL + +++ PD+ Y G F +YP +PPKV ET +YHPN+D EG CL I+
Sbjct: 31 NLLKWTVLLIPDKEPYNKGAFKVGITFPVDYPFKPPKVAFETKIYHPNVDEEGKFCLPIV 90
Query: 512 -REDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLF----EQHVQR 360
E+WKP ++ L L EP P P+ + A+E Q + + F E+H ++
Sbjct: 91 TAENWKPATKTEQVMMALLSLINEPEPSHPIRADVAEEFQKDHKKFMKTAEEHTRK 146
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 78.2 bits (184), Expect = 6e-15
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 14/131 (10%)
Frame = -2
Query: 701 DPDDLLNFK-LIICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVC 525
D +D+ ++ L+I P + Y GG F +YP +PPK+K + ++HPNID EGNVC
Sbjct: 29 DDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVC 88
Query: 524 LNIL-------------REDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRR 384
++IL E W PV TV +I+ + + +PN E P N +AA + N
Sbjct: 89 ISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYA 148
Query: 383 LFEQHVQRAMR 351
F++ V + +R
Sbjct: 149 EFKKKVAQCVR 159
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = -2
Query: 662 PDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLE-GNVCLNILREDWKPVLT 486
P + Y GG F K+ YP PP VK T ++HPN+ + G +CL+IL++ W LT
Sbjct: 46 PPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLT 105
Query: 485 VNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 375
+ +++ +Q L P P+DP + A + +F+
Sbjct: 106 LRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFK 142
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 74.5 bits (175), Expect = 8e-14
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = -2
Query: 647 YRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILRE--DWKPVLTVNSI 474
+ GG + ++P PPK K E ++HPN+ G VCL++L E DWKP +++ +
Sbjct: 53 WEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQL 112
Query: 473 VYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQR 360
+ G+Q L PN EDP EA NR +E+ V++
Sbjct: 113 LIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKK 150
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 74.5 bits (175), Expect = 8e-14
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = -2
Query: 647 YRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILRE--DWKPVLTVNSI 474
+ GG + ++P PPK K E ++HPN+ G VCL++L E DWKP +++ +
Sbjct: 53 WEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQL 112
Query: 473 VYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQR 360
+ G+Q L PN EDP EA NR +E+ V++
Sbjct: 113 LIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKK 150
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 66.1 bits (154), Expect = 3e-11
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Frame = -2
Query: 701 DPDDLLNFKLIIC-PDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVC 525
D D+ ++ +I P+E + G F +YP PPK++ ++HPNI +G VC
Sbjct: 30 DEDNFFEWECLITGPEETCFANGVFPARITFPQDYPLSPPKMRFTCGIFHPNIYADGRVC 89
Query: 524 LNIL-------------REDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRR 384
++IL E W PV ++ I+ + + EPN E P N AA + +R
Sbjct: 90 ISILHAPGDDPTGYELSNERWSPVQSIEKILLSVVSMLAEPNDESPANVSAAKMWREDRA 149
Query: 383 LFEQHVQRAMR 351
FE+ +R
Sbjct: 150 QFEKIADSLVR 160
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 64.9 bits (151), Expect = 6e-11
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Frame = -2
Query: 695 DDLLNFKLIICPDEGF-YRGGKFVFSFKVGPNYPHEPPKV---------------KCETA 564
++L++ K I EG Y GG F + +YP EPPKV K T
Sbjct: 48 NNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTR 107
Query: 563 VYHPNIDLE-GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNR 387
++HPNI + G +CL+IL++ W LT+ +++ LQ + P P DP + A + +N
Sbjct: 108 IWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNY 167
Query: 386 RLF 378
+F
Sbjct: 168 PMF 170
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 63.7 bits (148), Expect = 1e-10
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 16/144 (11%)
Frame = -2
Query: 791 SQKKASAAQLR-ITKDL-NEXNLPKTCNTEFPDPDDLLNFKL-IICPDEGFYRGGKFVFS 621
S+ S+ LR +T +L N + P T + D+L + + I P + Y+GG F S
Sbjct: 3 SKASTSSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKAS 62
Query: 620 FKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILR-------------EDWKPVLTVN 480
+ NYP+ PP +K T V+HPN+ G++C++IL E W P +V
Sbjct: 63 IRFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVR 122
Query: 479 SIVYGLQYLFLEPNPEDPLNKEAA 408
+I+ + L EPN P N +A+
Sbjct: 123 TILLSVISLLNEPNTSSPANVDAS 146
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = -2
Query: 695 DDLLNFKLIICPDEG-FYRGGKFVFSFKVGPNYPHEPPKVKC--ETAVYHPNIDLEGNVC 525
+DL +K+ + EG Y G F+ F GP YP P+V ET HP+I G++C
Sbjct: 33 NDLKQWKIGVVGAEGTLYAGEVFMLQFTFGPQYPFNSPEVMFVGETIPAHPHIYSNGHIC 92
Query: 524 LNILREDWKPVLTVNSI 474
L+IL +DW P L+V S+
Sbjct: 93 LSILSDDWTPALSVQSV 109
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 61.3 bits (142), Expect = 8e-10
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = -2
Query: 692 DLLNFKLIICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNID-LEGNVCL-N 519
D+ FK+I D Y+ F + V YP +PP +K VYHPN+D + +C
Sbjct: 44 DIFQFKII--GDGVLYKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCSPM 101
Query: 518 ILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNR 387
+L+E+WKP T+ ++ L L EP+ P+N +AA + N+
Sbjct: 102 LLQENWKPETTMEDVLLNLIVLLNEPDLSRPVNIDAAHDYIHNK 145
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = -2
Query: 659 DEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNID-LEGNVCLNILRED-WKPVLT 486
+E Y GG F K+G +YP + P VK T ++HP++ +G +CL+ + W +T
Sbjct: 389 EETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMT 448
Query: 485 VNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQ 372
+ ++ +Q N ++P++ E ++ +NR +FE+
Sbjct: 449 IYKVLIVIQSWMSNFNEKEPIDVEILEQATNNREVFEK 486
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 662 PDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNID-LEGNVCLNILREDWKPVLT 486
P + Y G + + YP + P + ++HPNID G VCL+++ + W +
Sbjct: 42 PKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALYD 101
Query: 485 VNSIV-YGLQYLFLEPNPEDPLNKEAA 408
+ +I L L PN DPLN EAA
Sbjct: 102 LTNIFDTFLPQLLTYPNAADPLNGEAA 128
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = -2
Query: 647 YRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNIL-REDWKPVLTVNSIV 471
+ GG++ S +P PP + +T ++HPN+DL G++ L +L +E W ++ ++
Sbjct: 83 WEGGEYEVSVNFH-KWPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLL 141
Query: 470 YGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 375
+ L P+ N EA E ++ R +E
Sbjct: 142 REISNLLATPDLTQAANIEAWMEYENQRENYE 173
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Frame = -2
Query: 674 LIICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCET-----AVYHPNIDLEGNVCLNIL- 513
LI PD+ Y G F F YP PPK T ++PN+ +G +CL+IL
Sbjct: 448 LISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILG 507
Query: 512 ------REDWKPVLTVNSIVYGLQ 459
E W P ++ ++ +Q
Sbjct: 508 TWEGRPEEKWNPYCSLMQVLVSIQ 531
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = -2
Query: 719 CNTEFPDPDDLLNFKLIICPDEGFYRGGKFVFSFKVGPNYPHEP-PKVKCETAVYHPNID 543
C + LL +I P Y GG F + P H P+V T ++HPN+
Sbjct: 52 CIMRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLG 111
Query: 542 LEGNVCLNILREDWKPVLTV--NSIVYGLQ 459
GN + ++ + + L V N IV G++
Sbjct: 112 KYGNWDMRGIQWERRSNLEVLYNFIVEGMR 141
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 31.1 bits (67), Expect = 0.94
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 530 VCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDP 426
VC + +DWKP TV ++ QY+ + N DP
Sbjct: 856 VCRSFTLKDWKPGNTVLTLSANHQYILISGNQSDP 890
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 671 IICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNV 528
II P Y + + G NYP EPP V+ T V+ ++ V
Sbjct: 45 IIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGV 92
>Z37092-8|CAA85460.2| 327|Caenorhabditis elegans Hypothetical
protein F44F4.7 protein.
Length = 327
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 454 YSWNQTLKIPSTRKQLTSSKATGDFSN--NTFRELCEAATSAHLISN 320
YSW + L I Q+ S+ + + S NTF E+C T AH+I N
Sbjct: 156 YSWIR-LDIVLDDYQMFCSQWSANISTRANTFLEICSYLTVAHIIIN 201
>AY037792-1|AAK94756.1| 327|Caenorhabditis elegans SRA-12 protein.
Length = 327
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 454 YSWNQTLKIPSTRKQLTSSKATGDFSN--NTFRELCEAATSAHLISN 320
YSW + L I Q+ S+ + + S NTF E+C T AH+I N
Sbjct: 156 YSWIR-LDIVLDDYQMFCSQWSANISTRANTFLEICSYLTVAHIIIN 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,878
Number of Sequences: 27780
Number of extensions: 337785
Number of successful extensions: 851
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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