Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n14
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 433 KIPSTRKQLTSSKATGDFSNNTFRELC 353
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 433 KIPSTRKQLTSSKATGDFSNNTFRELC 353
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 433 KIPSTRKQLTSSKATGDFSNNTFRELC 353
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 433 KIPSTRKQLTSSKATGDFSNNTFRELC 353
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 433 KIPSTRKQLTSSKATGDFSNNTFRELC 353
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 433 KIPSTRKQLTSSKATGDFSNNTFRELC 353
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 755 TKDLNEXNLPKTCNTEFPD 699
           T +LN  N P TC T+  D
Sbjct: 13  TWELNATNSPHTCRTKNGD 31


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 376 NNTFRELCEAATSAHLISND 317
           N    ELC      H+IS D
Sbjct: 264 NEDLEELCRGCNLGHMISYD 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,845
Number of Sequences: 438
Number of extensions: 4377
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)