Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n13
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   1.8  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   1.8  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   2.4  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    24   3.1  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    24   3.1  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    24   3.1  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    24   3.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   5.5  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    23   7.2  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    23   7.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    23   7.2  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             23   9.6  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.6  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    23   9.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    23   9.6  

>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 157 ISSKTAPSSPANQQIPNIATFIIGTSEYGSLLSNI 261
           +S + + S+P N  +PN+  F +G +  G   S++
Sbjct: 21  LSKRKSKSTPYNALLPNVTVFAMGGTIAGCANSSL 55


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 157 ISSKTAPSSPANQQIPNIATFIIGTSEYGSLLSNI 261
           +S + + S+P N  +PN+  F +G +  G   S++
Sbjct: 21  LSKRKSKSTPYNALLPNVTVFAMGGTIAGCANSSL 55


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 72  YDYVSTRFGLLNFMCTKPIFVFDS 1
           YD +S  +GL  F+C+ P+FV  S
Sbjct: 107 YDNISD-YGLKYFLCSLPLFVMFS 129


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 145 NKNPISSKTAPSSPANQQIPNIAT 216
           N NP SS+    SPAN   PNI +
Sbjct: 253 NNNPSSSRRESESPANS--PNITS 274


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 250 VVSHTRKFQL*MLQY*EFADLRDLKAQFCY*WDSCFVFSCR 128
           V  H ++F     +Y     L D +   C  W +CF F CR
Sbjct: 139 VCGHNQRFP----RYNRIRALLDSRKGRCGEWANCFTFLCR 175


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 124 CNDMRKQNKNPISSKTAPSSPANQQIP 204
           CN +      P   K AP SPA + IP
Sbjct: 130 CNVVGYDMPTPGEQKEAPPSPAQEAIP 156


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 102 LLNSTRSLDDYDYVSTR 52
           +LNST  +DD  Y+STR
Sbjct: 540 ILNSTAYIDDIMYMSTR 556


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 259  YLIVVSHTRKFQL*MLQY*EFADLRDLKAQFCY*WDSCFVFSCR 128
            Y +VV   + FQ    QY    + + +K+     W S   F CR
Sbjct: 956  YQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCR 999


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 84  SLDDYDYVSTRFGLLN 37
           S DDYDYVS   G+ N
Sbjct: 515 SRDDYDYVSHLVGIDN 530


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 111 LNGLLNSTRSLDDYDYVSTRFGLLNFMCTKPIFV 10
           LN L +     D Y ++S + G+L +   KP  V
Sbjct: 112 LNYLQDDIDLSDPYTFLSIKRGILQYTWLKPFLV 145


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 63  HNHNHLDFSCYLISRLKYFKM 125
           H   H+D S YL S  KY  +
Sbjct: 204 HYEQHIDDSSYLFSLKKYLSL 224


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 LNGLLNSTRSLDDYDYVSTRFGLLNFMC 28
           L GL++S  S+DD+D       L+ + C
Sbjct: 249 LLGLISSDSSVDDHDNEQDDVDLIGWEC 276


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +3

Query: 207 YCNIYNWNFRVWLTTI-KY 260
           +CN+ NWN   WL ++ KY
Sbjct: 96  FCNVNNWN---WLMSVSKY 111


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 139 KQNKNP-ISSKTAPSSPANQQ 198
           +Q + P  SS TAP++ ANQQ
Sbjct: 169 QQTQQPQASSPTAPNTEANQQ 189


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 112 SILKCNDMRKQNKNPISSKTAPSSP 186
           S+   + ++ Q+  PISS ++ SSP
Sbjct: 469 SVPSSSSVQPQSSTPISSSSSASSP 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,417
Number of Sequences: 5004
Number of extensions: 17027
Number of successful extensions: 47
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)