Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n13
         (266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981...    25   6.3  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    25   8.3  
07_01_1190 + 11301135-11301608,11302497-11302571,11303027-113030...    25   8.3  

>04_04_0753 -
           27797298-27797547,27797765-27797951,27798040-27798113,
           27798719-27798949,27799047-27799133,27799244-27799434
          Length = 339

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 145 NKNPISSKTAPSSPANQQIPNIATFIIGTSEYGSLLSNI 261
           NKN IS +   S    +++P I T I+  S  G L+S +
Sbjct: 165 NKNTISGQGTVSLELLEEVPEIDTIIVPISG-GGLISGV 202


>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 64  CFYKIWSAEFYVYETYICFR 5
           CFY  WS +F  ++ ++CFR
Sbjct: 462 CFY--WSIQFPNFKDHLCFR 479


>07_01_1190 +
           11301135-11301608,11302497-11302571,11303027-11303086,
           11304822-11304881,11304963-11305043,11305131-11305166,
           11305418-11305510
          Length = 292

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 151 NPISSKTAPSSPANQQIPN 207
           NP SS ++P+ P +  IPN
Sbjct: 13  NPTSSSSSPTKPPSPAIPN 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,919,393
Number of Sequences: 37544
Number of extensions: 85453
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)