Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n13
         (266 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical p...    26   3.2  
Z70035-10|CAA93871.2|  473|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      25   7.4  
AF024503-5|AAG24096.1|  330|Caenorhabditis elegans Serpentine re...    25   9.7  

>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 151 NPISSKTAPSSPANQQIPNIA 213
           NP SS TAP++P N   P  A
Sbjct: 655 NPTSSTTAPTAPVNPTSPTTA 675


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 151 NPISSKTAPSSPANQQIPNIA 213
           NP SS TAP++P N   P  A
Sbjct: 711 NPTSSTTAPTAPVNPTSPTTA 731


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 151 NPISSKTAPSSPANQQIPNIA 213
           NP SS TAP++P N   P  A
Sbjct: 534 NPTSSTTAPTAPVNPTSPTTA 554


>U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical
           protein T20D4.3 protein.
          Length = 642

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 86  LVLFNKPFKVF*NVTT*ENKTRIPLVAKLRLQVPQISKFLILQH 217
           L+L +   ++  N+      TRIP+   L +  PQ+  F I+ H
Sbjct: 553 LILNSGTTQIGENLNLISKSTRIPIEQNLTIDNPQLQVFFIMLH 596


>Z70035-10|CAA93871.2|  473|Caenorhabditis elegans Hypothetical
           protein R09D1.12 protein.
          Length = 473

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 138 SHVVTF*NT-LNG--LLNSTRSLDDYDYVSTRFGLLNFMCTKPIFV 10
           SH+++F N   NG  L   TRS+DD D  ST F +   +    IFV
Sbjct: 29  SHMLSFMNPPKNGTSLPRLTRSIDDDDEGSTMFKVAGALFAYGIFV 74


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 127  NDMRKQNKNPISSKTAPSSPANQQIPN 207
            N   ++N+NP S+ T P  P    IP+
Sbjct: 2848 NRNEEENQNPTSTNTYPRIPPQAPIPH 2874


>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
            F26A3.8 protein.
          Length = 1601

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 133  MRKQNKNPISSKTAPSS 183
            MR+Q KNPI+ K  P +
Sbjct: 1531 MRRQEKNPINDKAKPKT 1547


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 133  MRKQNKNPISSKTAPSS 183
            MR+Q KNPI+ K  P +
Sbjct: 1531 MRRQEKNPINDKAKPKT 1547


>AF024503-5|AAG24096.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein246 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 165 ATNGILVLFSHVVTF 121
           A++  L+LFSHVVTF
Sbjct: 12  ASSDFLMLFSHVVTF 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,718,579
Number of Sequences: 27780
Number of extensions: 93106
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)