Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n11
         (414 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97669-1|AAB91371.1| 2321|Homo sapiens Notch3 protein.                 30   2.6  
AF058900-1|AAC14346.1| 2321|Homo sapiens Notch3 protein.               30   2.6  
AC004663-1|AAC15789.1| 2281|Homo sapiens Notch 3 protein.              30   2.6  
AK023348-1|BAB14535.1|  413|Homo sapiens protein ( Homo sapiens ...    29   8.1  

>U97669-1|AAB91371.1| 2321|Homo sapiens Notch3 protein.
          Length = 2321

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 212  HQCCWFPPGQTVDRRGSSGCKSRHKPPRQDLDRAQQSHKRDSPAGK 75
            H   WFP G ++ +  +SG K R +P  QD    +   K +S  G+
Sbjct: 1671 HSTLWFPEGFSLHKDVASGHKGRREPVGQDALGMKNMAKGESLMGE 1716


>AF058900-1|AAC14346.1| 2321|Homo sapiens Notch3 protein.
          Length = 2321

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 212  HQCCWFPPGQTVDRRGSSGCKSRHKPPRQDLDRAQQSHKRDSPAGK 75
            H   WFP G ++ +  +SG K R +P  QD    +   K +S  G+
Sbjct: 1671 HSTLWFPEGFSLHKDVASGHKGRREPVGQDALGMKNMAKGESLMGE 1716


>AC004663-1|AAC15789.1| 2281|Homo sapiens Notch 3 protein.
          Length = 2281

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 212  HQCCWFPPGQTVDRRGSSGCKSRHKPPRQDLDRAQQSHKRDSPAGK 75
            H   WFP G ++ +  +SG K R +P  QD    +   K +S  G+
Sbjct: 1631 HSTLWFPEGFSLHKDVASGHKGRREPVGQDALGMKNMAKGESLMGE 1676


>AK023348-1|BAB14535.1|  413|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13286 fis, clone OVARC1001154, highly similar to
           Homo sapiens clone 24720 epithelin 1 and 2 mRNA. ).
          Length = 413

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 225 SPYI-ASVLLVSSRADCRPTGIIWVQVPPQTAP-PR-PG*STAIT 100
           +P++ +S L+VSS A   P  ++W   P   AP PR P   T  T
Sbjct: 26  TPWVPSSALIVSSNARTSPRAVLWSMAPGGAAPCPRLPAVKTGCT 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,078,172
Number of Sequences: 237096
Number of extensions: 1335492
Number of successful extensions: 3727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3726
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)