Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10n11
(414 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051552-1|AAK92976.1| 418|Drosophila melanogaster GH20109p pro... 29 3.2
AE014296-1259|AAF50560.2| 418|Drosophila melanogaster CG8560-PA... 29 3.2
AY058551-1|AAL13780.1| 806|Drosophila melanogaster LD24714p pro... 27 7.4
AE014134-539|AAF51161.1| 757|Drosophila melanogaster CG3542-PB,... 27 7.4
AE014134-538|AAF51160.1| 806|Drosophila melanogaster CG3542-PA,... 27 7.4
AE013599-3554|AAF46965.2| 1073|Drosophila melanogaster CG30188-P... 27 7.4
BT024195-1|ABC86257.1| 348|Drosophila melanogaster RE74001p pro... 27 9.8
AJ249678-1|CAB62508.1| 650|Drosophila melanogaster gamma tubuli... 27 9.8
AE014134-1901|AAF52962.2| 650|Drosophila melanogaster CG6176-PA... 27 9.8
AE014134-1178|AAF52445.2| 184|Drosophila melanogaster CG32828-P... 27 9.8
>AY051552-1|AAK92976.1| 418|Drosophila melanogaster GH20109p
protein.
Length = 418
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 130 AKTWIEHSNHINAIVQLENNFSSSSPLLE 44
A+ WI H+ + I QL NF+++S LL+
Sbjct: 183 AREWIAHAGALYVIHQLVENFAANSELLK 211
>AE014296-1259|AAF50560.2| 418|Drosophila melanogaster CG8560-PA
protein.
Length = 418
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 130 AKTWIEHSNHINAIVQLENNFSSSSPLLE 44
A+ WI H+ + I QL NF+++S LL+
Sbjct: 183 AREWIAHAGALYVIHQLVENFAANSELLK 211
>AY058551-1|AAL13780.1| 806|Drosophila melanogaster LD24714p
protein.
Length = 806
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +3
Query: 189 WRKPTALMQYTESLDSLCVLRSYVKKTGH------SARETTW 296
W KP ALM E L + C + Y TG + +ET W
Sbjct: 78 WEKPEALMTPAELLHNQCPWKEYRSDTGKVYYHNVATKETCW 119
>AE014134-539|AAF51161.1| 757|Drosophila melanogaster CG3542-PB,
isoform B protein.
Length = 757
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +3
Query: 189 WRKPTALMQYTESLDSLCVLRSYVKKTGH------SARETTW 296
W KP ALM E L + C + Y TG + +ET W
Sbjct: 29 WEKPEALMTPAELLHNQCPWKEYRSDTGKVYYHNVATKETCW 70
>AE014134-538|AAF51160.1| 806|Drosophila melanogaster CG3542-PA,
isoform A protein.
Length = 806
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +3
Query: 189 WRKPTALMQYTESLDSLCVLRSYVKKTGH------SARETTW 296
W KP ALM E L + C + Y TG + +ET W
Sbjct: 78 WEKPEALMTPAELLHNQCPWKEYRSDTGKVYYHNVATKETCW 119
>AE013599-3554|AAF46965.2| 1073|Drosophila melanogaster CG30188-PA
protein.
Length = 1073
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +2
Query: 119 PGLGGAVCGGTCTQMIPVGLQ-SALEETNSTDAIYGEPRFSVCPALLCEENGSQRSG 286
PG GG G T T G A E S + YG P L + NGS +SG
Sbjct: 933 PGRGGGGGGATVTAAGAGGYHLPAYETRTSPTSPYGSTTTCTMPLLGGQSNGSLQSG 989
>BT024195-1|ABC86257.1| 348|Drosophila melanogaster RE74001p
protein.
Length = 348
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +3
Query: 198 PTALMQYTESLDSLCVLRSYVKKTGHSARETTWRVVERSKVT*ISYLRTVNYYSFFFVS 374
PT + +Y L ++R+Y + + TWR V + + T+ Y FF++
Sbjct: 141 PTTIERYNNIFRFLLIIRTYQYEIQRVWAKQTWRAKSAKDVPPNNKIITLRNYLMFFLN 199
>AJ249678-1|CAB62508.1| 650|Drosophila melanogaster gamma tubulin
ring complex protein protein.
Length = 650
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +3
Query: 198 PTALMQYTESLDSLCVLRSYVKKTGHSARETTWRVVERSKVT*ISYLRTVNYYSFFFVS 374
PT + +Y L ++R+Y + + TWR V + + T+ Y FF++
Sbjct: 443 PTTIERYNNIFRFLLIIRTYQYEIQRVWAKQTWRAKSAKDVPPNNKIITLRNYLMFFLN 501
>AE014134-1901|AAF52962.2| 650|Drosophila melanogaster CG6176-PA
protein.
Length = 650
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +3
Query: 198 PTALMQYTESLDSLCVLRSYVKKTGHSARETTWRVVERSKVT*ISYLRTVNYYSFFFVS 374
PT + +Y L ++R+Y + + TWR V + + T+ Y FF++
Sbjct: 443 PTTIERYNNIFRFLLIIRTYQYEIQRVWAKQTWRAKSAKDVPPNNKIITLRNYLMFFLN 501
>AE014134-1178|AAF52445.2| 184|Drosophila melanogaster CG32828-PA
protein.
Length = 184
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 77 FQLDYRVYVIAVLYPGL-GGAVCGGTCTQMIPVGLQSALEETNSTDAIYGEPR 232
FQL+ V +A+ P GG C + T + QSA E +++ IY E R
Sbjct: 45 FQLEPAVVSLALASPQRSGGVACRRSLTAVKSEQQQSASERAFTSNRIYNESR 97
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,282
Number of Sequences: 53049
Number of extensions: 418146
Number of successful extensions: 1157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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