Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n11
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-3|AAK21432.1|  145|Caenorhabditis elegans Hypothetical ...    28   2.3  
U29380-4|AAA68738.1|  646|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z92815-2|CAB07293.2|  476|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z92815-1|CAB07292.2|  530|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z77663-2|CAB01209.1|  215|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF098997-5|AAC68717.1|  218|Caenorhabditis elegans Insulin relat...    26   9.4  
AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical ...    26   9.4  

>AF039038-3|AAK21432.1|  145|Caenorhabditis elegans Hypothetical
           protein K06A5.3 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 231 DSLCVLRSYVKKTGHSARETTWRVVERSK 317
           DSL V+ + V K  H+ R + WR  ER+K
Sbjct: 82  DSLYVIYTLVGKEWHNERMSAWRCWERAK 110


>U29380-4|AAA68738.1|  646|Caenorhabditis elegans Hypothetical
           protein ZK546.5 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 104 SHKRDSPAGK*FFKFLTFVRVNIFFYILTFXQVC 3
           SHK DS A   F +     R  I FY+L F + C
Sbjct: 31  SHKVDSNAASPFSRLHPMERTYIKFYLLNFYRFC 64


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 133 PAKTWIEHSNHINAIVQLENNFSSSSP 53
           P   W  H NHI A   L+ NF + SP
Sbjct: 164 PFPGWPYHPNHIFASSNLDYNFKTYSP 190


>Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical
           protein Y53C12B.1 protein.
          Length = 793

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 202 VGFLQGRL*TDGDHLGASPATNRPAKTWIEHSNHINAIVQLENN 71
           VG+++G+L       GA     +   TW  H++HI A++Q+ ++
Sbjct: 166 VGYIEGQLNLYNIMRGAP---KKLVNTWKSHNSHITALLQVPDS 206


>Z92815-2|CAB07293.2|  476|Caenorhabditis elegans Hypothetical
           protein W01F3.1b protein.
          Length = 476

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +3

Query: 168 PSVYSLPWRKPTALMQYTESLDSLCVLRSYVKKTGHSARETTW 296
           P    L WR+   +++Y   LD   +L   +    HS  +  W
Sbjct: 147 PKFKKLSWRQLFHILEYISRLDQPVMLSVRLSVAAHSKEQLLW 189


>Z92815-1|CAB07292.2|  530|Caenorhabditis elegans Hypothetical
           protein W01F3.1a protein.
          Length = 530

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +3

Query: 168 PSVYSLPWRKPTALMQYTESLDSLCVLRSYVKKTGHSARETTW 296
           P    L WR+   +++Y   LD   +L   +    HS  +  W
Sbjct: 201 PKFKKLSWRQLFHILEYISRLDQPVMLSVRLSVAAHSKEQLLW 243


>Z77663-2|CAB01209.1|  215|Caenorhabditis elegans Hypothetical
           protein F53F4.2 protein.
          Length = 215

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +2

Query: 98  YVIAVLYP---GLGGAVCGGTCTQMIP 169
           Y  A  YP   G GGA CGGT   M+P
Sbjct: 160 YGYAAGYPMMGGAGGACCGGTGMGMMP 186


>AF098997-5|AAC68717.1|  218|Caenorhabditis elegans Insulin related
           protein 31 protein.
          Length = 218

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 290 CFPSAVTRFLHIRAQDTQRIEALRILHQCCWFPPGQTVDRRGSSGCK-SRHKPPRQDLDR 114
           C P   TR   +  +D      ++I   CC    G T D    + CK +R    RQ LD 
Sbjct: 96  CGPKLFTRVKTVCGEDINVDNKVKISDHCCTPEGGCTDDWIKENVCKQTRFNFFRQFLDS 155

Query: 113 AQQS 102
            Q+S
Sbjct: 156 PQRS 159


>AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.7 protein.
          Length = 252

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 201 TALMQYTESLDSLCVLRSYVKKTGHSARETTWRVVERSKVT*ISYLRTVNYYSFFFVSLY 380
           T +   T +L  L V   +++K   S  E+TW  V    +T I  L        FF  + 
Sbjct: 159 TLITTITLNLIDLVVAAFFIQKINKSISESTWFYVSCGLLTVIPLLFGYFVAKIFFKFVQ 218

Query: 381 VC 386
           +C
Sbjct: 219 IC 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,478,532
Number of Sequences: 27780
Number of extensions: 207599
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)