Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n11
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   4.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.3  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 24  NVKENVNSNKGEELEKLFSSWTIAFM*LLCSIQVLAGRF 140
           N   N N+N     +KL+ ++ I    +   + V  G F
Sbjct: 100 NYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 24  NVKENVNSNKGEELEKLFSSWTIAFM*LLCSIQVLAGRF 140
           N   N N+N     +KL+ ++ I    +   + V  G F
Sbjct: 100 NYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  VYVIAVLYPGLGGAVCGGTC 154
           V+ IA ++ G+G A C  +C
Sbjct: 90  VFKIAPIFKGIGYATCVLSC 109


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  VYVIAVLYPGLGGAVCGGTC 154
           V+ IA ++ G+G A C  +C
Sbjct: 143 VFKIAPIFKGIGYATCVLSC 162


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -2

Query: 200 WFPPGQTVDRRGSSGCKSRHKPPRQDLDRAQQSHKRDSPAG 78
           WF   +TVD  G +   +++    +D +R        + AG
Sbjct: 395 WFTYQETVDPAGCNAGPAKYYLKSRDPERTPYQWDNSTSAG 435


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 197  FPPGQTVDRRGSSGCK 150
            F  GQTV   G  GC+
Sbjct: 959  FQEGQTVSGGGMGGCQ 974



 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 180  CRPTGIIWVQVPPQTAP 130
            C+P G++  Q P  T P
Sbjct: 973  CQPGGVVQSQQPIMTDP 989


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,185
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)