Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n06
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    24   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   8.5  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 363 KISFAEVPSEVDPAEPKGELEGLNIPEEIIEEDSANRTD 247
           K   AE P E +P  P    +G N+ +  +    +NRTD
Sbjct: 31  KAGSAEQPKEQEPLPPVTPPQGENMLDMDLRGIYSNRTD 69


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 363 KISFAEVPSEVDP-AEPKGELEGLNIPEEIIEEDSANRTDTEENIHEIPEEVPDDRTEGD 187
           K++  +VP++ +P A  K   + +    E++  D A  +D    IH  PE VP    +GD
Sbjct: 151 KVNSVQVPTDDEPYASFKAMEDSVGGKCEVLY-DIAPLSDFV--IHRSPELVPMPTLKGD 207

Query: 186 GDSAPTVSI 160
           G     + I
Sbjct: 208 GRHMEVIKI 216


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -3

Query: 237 NIHEIPEEVPDDRTEGDGDSAPTVSILSSAPETPNVTDAEDVDE 106
           N   + E   DD  +GD D    V   +  P    +TD   V E
Sbjct: 382 NGEAVGEVDEDDDDDGDDDDDDDVEAANGKPAEGMLTDVFHVQE 425


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 279 IIEEDSANRTDTEENIHE 226
           +++E SANRTD  ++ +E
Sbjct: 234 LLDEPSANRTDLSKDDYE 251


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -3

Query: 180 SAPTVSILSSAPETPNVTD--AEDVDEFTSEEEG 85
           + PT SIL   PE  + TD    + D  T  E G
Sbjct: 107 AVPTKSILEKKPELVDATDPGEHNGDTVTDVEAG 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,538
Number of Sequences: 438
Number of extensions: 4105
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)